RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PNKDQ8N490 385 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 ZNF671Q8TAW3 534 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 DUS3LQ96G46 650 aaKnown RBP13.16□□□□□ -0.3
CLN3-229ENST00000567963 RBM4BQ9BQ04 359 aaKnown RBP13.16□□□□□ -0.3
CLN3-229ENST00000567963 PBOV1Q9GZY1 135 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 MMP27Q9H306 513 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 YY1AP1Q9H869 796 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 TVP23BQ9NYZ1 205 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 DNAJB9Q9UBS3 223 aa13.16□□□□□ -0.3
CLN3-229ENST00000567963 WNK1Q9H4A3 2382 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 CCDC182A6NF36 153 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 FKBP6O75344 327 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 ZNF254O75437 659 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 TSPAN9O75954 239 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 PAHP00439 452 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 IGLV3-1P01715 115 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 MRPL3P09001 348 aaKnown RBP13.15□□□□□ -0.3
CLN3-229ENST00000567963 SAA4P35542 130 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 TGFBR2P37173 567 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 CRISP1P54107 249 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 ROM1Q03395 351 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 ACSM1Q08AH1 577 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 RIPPLY1Q0D2K3 151 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 BLMHQ13867 455 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 FLOT2Q14254 428 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 NCR3LG1Q68D85 454 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 DHRS7BQ6IAN0 325 aaPredicted RBP13.15□□□□□ -0.3
CLN3-229ENST00000567963 THAP5Q7Z6K1 395 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 OR51E1Q8TCB6 317 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 AQP3Q92482 292 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 PPP1R14AQ96A00 147 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 ELL3Q9HB65 397 aaPredicted RBP13.15□□□□□ -0.3
CLN3-229ENST00000567963 GPR84Q9NQS5 396 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 ZNF222Q9UK12 451 aa13.15□□□□□ -0.3
CLN3-229ENST00000567963 TCRBV3S1A0A5B6 114 aa13.14□□□□□ -0.31
CLN3-229ENST00000567963 PRR32B1ATL7 298 aa13.14□□□□□ -0.31
CLN3-229ENST00000567963 GSC2O15499 205 aa13.14□□□□□ -0.31
CLN3-229ENST00000567963 ZBTB37Q5TC79 503 aa13.14□□□□□ -0.31
CLN3-229ENST00000567963 MOB3CQ70IA8 216 aa13.14□□□□□ -0.31
CLN3-229ENST00000567963 COMMD2Q86X83 199 aa13.14□□□□□ -0.31
CLN3-229ENST00000567963 OR5R1Q8NH85 324 aa13.14□□□□□ -0.31
CLN3-229ENST00000567963 ASB17Q8WXJ9 295 aa13.14□□□□□ -0.31
CLN3-229ENST00000567963 DNAJC9Q8WXX5 260 aa13.14□□□□□ -0.31
CLN3-229ENST00000567963 NRBF2Q96F24 287 aa13.14□□□□□ -0.31
CLN3-229ENST00000567963 SDSLQ96GA7 329 aa13.14□□□□□ -0.31
CLN3-229ENST00000567963 OR8B4Q96RC9 309 aa13.14□□□□□ -0.31
CLN3-229ENST00000567963 TCF7L1Q9HCS4 588 aa13.14□□□□□ -0.31
CLN3-229ENST00000567963 PAPOLBQ9NRJ5 636 aaKnown RBP13.14□□□□□ -0.31
CLN3-229ENST00000567963 RASL12Q9NYN1 266 aa13.14□□□□□ -0.31
CLN3-229ENST00000567963 COPS3Q9UNS2 423 aa13.14□□□□□ -0.31
CLN3-229ENST00000567963 PIGLQ9Y2B2 252 aa13.14□□□□□ -0.31
CLN3-229ENST00000567963 TMEM14AQ9Y6G1 99 aa13.14□□□□□ -0.31
CLN3-229ENST00000567963 OR5B21A6NL26 309 aa13.13□□□□□ -0.31
CLN3-229ENST00000567963 GYG2O15488 501 aa13.13□□□□□ -0.31
CLN3-229ENST00000567963 FAHP16930 419 aa13.13□□□□□ -0.31
CLN3-229ENST00000567963 DAPP51397 102 aa13.13□□□□□ -0.31
CLN3-229ENST00000567963 PTGES3Q15185 160 aaKnown RBP13.13□□□□□ -0.31
CLN3-229ENST00000567963 LCN1P1Q5VSP4 162 aa13.13□□□□□ -0.31
CLN3-229ENST00000567963 HCP5Q6MZN7 132 aa13.13□□□□□ -0.31
CLN3-229ENST00000567963 HAGHLQ6PII5 290 aaPredicted RBP13.13□□□□□ -0.31
CLN3-229ENST00000567963 BEND2Q8NDZ0 799 aa13.13□□□□□ -0.31
CLN3-229ENST00000567963 TMEM185AQ8NFB2 350 aa13.13□□□□□ -0.31
CLN3-229ENST00000567963 OR5D13Q8NGL4 314 aa13.13□□□□□ -0.31
CLN3-229ENST00000567963 NUFIP1Q9UHK0 495 aaKnown RBP13.13□□□□□ -0.31
CLN3-229ENST00000567963 ENPP5Q9UJA9 477 aa13.13□□□□□ -0.31
CLN3-229ENST00000567963 POMPQ9Y244 141 aa13.13□□□□□ -0.31
CLN3-229ENST00000567963 SF3B6Q9Y3B4 125 aaKnown RBP13.13□□□□□ -0.31
CLN3-229ENST00000567963 TGP01266 2768 aa13.13□□□□□ -0.31
CLN3-229ENST00000567963 TRBV23-1A0A0A0MS06 115 aa13.12□□□□□ -0.31
CLN3-229ENST00000567963 H0YAE9 185 aa13.12□□□□□ -0.31
CLN3-229ENST00000567963 MTRF1O75570 445 aaKnown RBP13.12□□□□□ -0.31
CLN3-229ENST00000567963 DHRS3O75911 302 aa13.12□□□□□ -0.31
CLN3-229ENST00000567963 NRASP01111 189 aa13.12□□□□□ -0.31
CLN3-229ENST00000567963 RIDAP52758 137 aaKnown RBP13.12□□□□□ -0.31
CLN3-229ENST00000567963 ZNF829Q3KNS6 432 aaPredicted RBP13.12□□□□□ -0.31
CLN3-229ENST00000567963 DNAL1Q4LDG9 190 aa13.12□□□□□ -0.31
CLN3-229ENST00000567963 PLCXD3Q63HM9 321 aa13.12□□□□□ -0.31
CLN3-229ENST00000567963 FAHD1Q6P587 224 aa13.12□□□□□ -0.31
CLN3-229ENST00000567963 ACP7Q6ZNF0 438 aa13.12□□□□□ -0.31
CLN3-229ENST00000567963 TTTY10Q9BZA0 68 aa13.12□□□□□ -0.31
CLN3-229ENST00000567963 IKZF2Q9UKS7 526 aa13.12□□□□□ -0.31
CLN3-229ENST00000567963 ANKRD61A6NGH8 418 aa13.11□□□□□ -0.31
CLN3-229ENST00000567963 RFPL4AA6NLU0 287 aa13.11□□□□□ -0.31
CLN3-229ENST00000567963 RFPL4AL1F8VTS6 287 aa13.11□□□□□ -0.31
CLN3-229ENST00000567963 PRKYO43930 277 aa13.11□□□□□ -0.31
CLN3-229ENST00000567963 SRSF10O75494 262 aaKnown RBP13.11□□□□□ -0.31
CLN3-229ENST00000567963 TTRP02766 147 aa13.11□□□□□ -0.31
CLN3-229ENST00000567963 CXCR4P61073 352 aa13.11□□□□□ -0.31
CLN3-229ENST00000567963 MFGE8Q08431 387 aaPredicted RBP13.11□□□□□ -0.31
CLN3-229ENST00000567963 SLC35E4Q6ICL7 350 aa13.11□□□□□ -0.31
CLN3-229ENST00000567963 FAM185AQ8N0U4 392 aa13.11□□□□□ -0.31
CLN3-229ENST00000567963 POC1AQ8NBT0 407 aa13.11□□□□□ -0.31
CLN3-229ENST00000567963 C17orf50Q8WW18 174 aa13.11□□□□□ -0.31
CLN3-229ENST00000567963 UBE2FQ969M7 185 aa13.11□□□□□ -0.31
CLN3-229ENST00000567963 SLC7A6OSQ96CW6 309 aaPredicted RBP13.11□□□□□ -0.31
CLN3-229ENST00000567963 AJUBAQ96IF1 538 aa13.11□□□□□ -0.31
CLN3-229ENST00000567963 CNN2Q99439 309 aaKnown RBP13.11□□□□□ -0.31
CLN3-229ENST00000567963 HAAOP46952 286 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 CAPZA1P52907 286 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 ESRRGP62508 458 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms