RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 POLDIP2Q9Y2S7 368 aa11.15□□□□□ -0.62
CLK3-216ENST00000564468 ANK2Q01484 3957 aa11.15□□□□□ -0.62
CLK3-216ENST00000564468 IGHV3OR15-7A0A075B7D8 119 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 IRGMA1A4Y4 181 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 NKX6-3A6NJ46 265 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 AKR7A2O43488 359 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 GATBO75879 557 aaKnown RBP11.14□□□□□ -0.63
CLK3-216ENST00000564468 ADRA2CP18825 462 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 GLRA1P23415 457 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 CCR9P51686 369 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 ODF4Q2M2E3 257 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 WDR38Q5JTN6 314 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 ATPAF1Q5TC12 328 aaPredicted RBP11.14□□□□□ -0.63
CLK3-216ENST00000564468 USP43Q70EL4 1123 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 SYS1Q8N2H4 156 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 BPIFB2Q8N4F0 458 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 DHRSXQ8N5I4 330 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 OR2G2Q8NGZ5 317 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 PP6455Q8WZ26 134 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 TMIGD2Q96BF3 282 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 MED30Q96HR3 178 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 DMRTB1Q96MA1 342 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 ALG8Q9BVK2 526 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 C19orf24Q9BVV8 132 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 GPR173Q9NS66 373 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 RASL12Q9NYN1 266 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 NUP50Q9UKX7 468 aa11.14□□□□□ -0.63
CLK3-216ENST00000564468 ANKRD61A6NGH8 418 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.13□□□□□ -0.63
CLK3-216ENST00000564468 J3QLW9 94 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 DVL1O14640 695 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 NDUFB3O43676 98 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 FSHBP01225 129 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 IGHA1P01876 353 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 ISG15P05161 165 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 ZNF19P17023 458 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 HAAOP46952 286 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 OR12D2P58182 307 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 HOXA4Q00056 320 aaPredicted RBP11.13□□□□□ -0.63
CLK3-216ENST00000564468 IL18R1Q13478 541 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 KRTAP24-1Q3LI83 254 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 LRRC10Q5BKY1 277 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 ZNF691Q5VV52 312 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 STUMQ69YW2 141 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 HAGHLQ6PII5 290 aaPredicted RBP11.13□□□□□ -0.63
CLK3-216ENST00000564468 LHFPL3Q86UP9 236 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 PRSS35Q8N3Z0 413 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 CYGBQ8WWM9 190 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 AQP3Q92482 292 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 DACT3Q96B18 629 aaPredicted RBP11.13□□□□□ -0.63
CLK3-216ENST00000564468 C4orf36Q96KX1 117 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 CCL13Q99616 98 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 FGF23Q9GZV9 251 aaPredicted RBP11.13□□□□□ -0.63
CLK3-216ENST00000564468 DCLRE1BQ9H816 532 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 AMBNQ9NP70 447 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 NLKQ9UBE8 527 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 AASSQ9UDR5 926 aa11.13□□□□□ -0.63
CLK3-216ENST00000564468 LOC107986453A0A1B0GWG9 222 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 PQLC2LA1A4F0 135 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 J3QT63 122 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 CASQ2O14958 399 aaPredicted RBP11.12□□□□□ -0.63
CLK3-216ENST00000564468 RHBDL1O75783 438 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 PEX2P28328 305 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 FUT6P51993 359 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 GMFBP60983 142 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 MED21Q13503 144 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 ALKBH1Q13686 389 aaKnown RBP11.12□□□□□ -0.63
CLK3-216ENST00000564468 CNN3Q15417 329 aaKnown RBP11.12□□□□□ -0.63
CLK3-216ENST00000564468 RBMS3Q6XE24 437 aaKnown RBP11.12□□□□□ -0.63
CLK3-216ENST00000564468 ZFAND2BQ8WV99 257 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 ST8SIA4Q92187 359 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 UPRTQ96BW1 309 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 PELI1Q96FA3 418 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 CHST5Q9GZS9 411 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 NEK6Q9HC98 313 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 ERVK13-1Q9NX77 482 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 FRRS1LQ9P0K9 344 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 HHLA2Q9UM44 414 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 MYRFQ9Y2G1 1151 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 HSPE1-MOB4S4R3N1 261 aa11.12□□□□□ -0.63
CLK3-216ENST00000564468 A6NIN4 97 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 OR2AT4A6NND4 320 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 ZNF879B4DU55 563 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 C22orf46C9J442 243 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 H0YAE9 185 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 NOS1APO75052 506 aaPredicted RBP11.11□□□□□ -0.63
CLK3-216ENST00000564468 ACAA1P09110 424 aaPredicted RBP11.11□□□□□ -0.63
CLK3-216ENST00000564468 CCDC159P0C7I6 412 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 ZNF20P17024 532 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 DCKP27707 260 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 KIR3DL2P43630 455 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 TGM4P49221 684 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 GBX2P52951 348 aaPredicted RBP11.11□□□□□ -0.63
CLK3-216ENST00000564468 BPIFB3P59826 476 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 IL13RA1P78552 427 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 SMIM21Q3B7S5 101 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 DMRTC1Q5HYR2 192 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 OGFRL1Q5TC84 451 aaPredicted RBP11.11□□□□□ -0.63
CLK3-216ENST00000564468 METTL11BQ5VVY1 283 aa11.11□□□□□ -0.63
CLK3-216ENST00000564468 ZNF788Q6ZQV5 615 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms