RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 PIGTQ969N2 578 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 BORCS8Q96FH0 119 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 SFXN3Q9BWM7 321 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 SCPEP1Q9HB40 452 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 TUBG2Q9NRH3 451 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 GPR173Q9NS66 373 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 COPZ2Q9P299 210 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 AMDHD2Q9Y303 409 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 STARD10Q9Y365 291 aa7.71□□□□□ -1.18
VPS39-207ENST00000563692 FAM230AA0A1W2PPH8 454 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 TUBAL3A6NHL2 446 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 ANKRD30BLA7E2S9 258 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 TMEM14DPA8MWL7 114 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 KDM4BO94953 1096 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 CST4P01036 141 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 CGAP01215 116 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 CSF1P09603 554 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 TMEM225BP0DP42 221 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 VSIG8P0DPA2 414 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 CCL2P13500 99 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 SPNP16150 400 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 SELEP16581 610 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 COX5AP20674 150 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 IL32P24001 234 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 OR3A4PP47883 348 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 GK2Q14410 553 aaPredicted RBP7.7□□□□□ -1.18
VPS39-207ENST00000563692 FBXL19-AS1Q494R0 122 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 RNASE12Q5GAN4 147 aaKnown RBP7.7□□□□□ -1.18
VPS39-207ENST00000563692 TMEM42Q69YG0 159 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 BHLHA15Q7RTS1 189 aaPredicted RBP7.7□□□□□ -1.18
VPS39-207ENST00000563692 ZNF584Q8IVC4 421 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 C1orf174Q8IYL3 243 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 CHST4Q8NCG5 386 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 NAXEQ8NCW5 288 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 OR56B1Q8NGI3 324 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 OR52I2Q8NH67 350 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 TRIM63Q969Q1 353 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 USB1Q9BQ65 265 aaKnown RBP7.7□□□□□ -1.18
VPS39-207ENST00000563692 METTL9Q9H1A3 318 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 DPAGT1Q9H3H5 408 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 PIGMQ9H3S5 423 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 AUNIPQ9H7T9 357 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 NOX3Q9HBY0 568 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 PTTG3PQ9NZH4 202 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 MYEF2Q9P2K5 600 aaKnown RBP7.7□□□□□ -1.18
VPS39-207ENST00000563692 RBMX2Q9Y388 322 aaKnown RBP7.7□□□□□ -1.18
VPS39-207ENST00000563692 RHBDD3Q9Y3P4 386 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 CCDC168Q8NDH2 2452 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 ADGRG4Q8IZF6 3080 aa7.7□□□□□ -1.18
VPS39-207ENST00000563692 ZNF503-AS2A6NEH8 195 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 H7C417 338 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 MSTNO14793 375 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 LANCL1O43813 399 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 CDC14BO60729 498 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 CRTAPO75718 401 aaPredicted RBP7.69□□□□□ -1.18
VPS39-207ENST00000563692 MPIG6BO95866 241 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 CSTBP04080 98 aaKnown RBP7.69□□□□□ -1.18
VPS39-207ENST00000563692 NAT2P11245 290 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 ZNF14P17017 642 aaPredicted RBP7.69□□□□□ -1.18
VPS39-207ENST00000563692 ANOS1P23352 680 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 ACKR3P25106 362 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 RAD52P43351 418 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 SRP9P49458 86 aaKnown RBP7.69□□□□□ -1.18
VPS39-207ENST00000563692 KRTAP10-9P60411 292 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 ACTBP60709 375 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 ACTG1P63261 375 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 QRFPP83859 136 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 SORDQ00796 357 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 PLA2G7Q13093 441 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 RSU1Q15404 277 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 RSBN1Q5VWQ0 802 aaPredicted RBP7.69□□□□□ -1.18
VPS39-207ENST00000563692 PLCXD3Q63HM9 321 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 OR10K2Q6IF99 312 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 DNM1P46Q6ZS02 220 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 CXorf67Q86X51 503 aaPredicted RBP7.69□□□□□ -1.18
VPS39-207ENST00000563692 PAQR4Q8N4S7 273 aaPredicted RBP7.69□□□□□ -1.18
VPS39-207ENST00000563692 FAM169BQ8N8A8 192 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 OR51T1Q8NGJ9 327 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 OR10R2Q8NGX6 335 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 NPRL2Q8WTW4 380 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 CREB3L1Q96BA8 519 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 NEDD4LQ96PU5 975 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 SPACA5Q96QH8 159 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 TMEM59Q9BXS4 323 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 ACTR6Q9GZN1 396 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 OPN3Q9H1Y3 402 aaPredicted RBP7.69□□□□□ -1.18
VPS39-207ENST00000563692 ELL3Q9HB65 397 aaPredicted RBP7.69□□□□□ -1.18
VPS39-207ENST00000563692 CRIM1Q9NZV1 1036 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 NLKQ9UBE8 527 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 MTFP1Q9UDX5 166 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 MPC1Q9Y5U8 109 aa7.69□□□□□ -1.18
VPS39-207ENST00000563692 ANKRD20A5PA0PJZ0 165 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 OR5H1A6NKK0 313 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 CD300LBA8K4G0 201 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 ZNF850A8MQ14 1090 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 ICMTO60725 284 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 CYB5AP00167 134 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 DHFRP00374 187 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 NGFP01138 241 aa7.68□□□□□ -1.18
VPS39-207ENST00000563692 IGKV3-15P01624 115 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms