RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 GNG8Q9UK08 70 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 V9GYS6 101 aa12.96□□□□□ -0.33
VPS39-203ENST00000561797 DNHD1Q96M86 4753 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 MDFIC2A0A1B0GVS7 189 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 GABRA2P47869 451 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 TGM4P49221 684 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 LRRC10Q5BKY1 277 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 CLVS2Q5SYC1 327 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 ATPAF1Q5TC12 328 aaPredicted RBP12.95□□□□□ -0.34
VPS39-203ENST00000561797 RUSC1-AS1Q66K80 236 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 CATSPERDQ86XM0 798 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 AQP3Q92482 292 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 H1FXQ92522 213 aaKnown RBP12.95□□□□□ -0.34
VPS39-203ENST00000561797 RORBQ92753 470 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 TMIGD2Q96BF3 282 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 RNFT2Q96EX2 444 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 TBX15Q96SF7 602 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 MBOAT4Q96T53 435 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 SLC29A1Q99808 456 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 C9orf16Q9BUW7 83 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 SIRPDQ9H106 197 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 NLKQ9UBE8 527 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 RPUSD1Q9UJJ7 312 aaKnown RBP12.95□□□□□ -0.34
VPS39-203ENST00000561797 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.95□□□□□ -0.34
VPS39-203ENST00000561797 GMPPBQ9Y5P6 360 aa12.95□□□□□ -0.34
VPS39-203ENST00000561797 A0A1B0GVI7 797 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 OR2AT4A6NND4 320 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 SULT1C4O75897 302 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 BAG2O95816 211 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 MMP9P14780 707 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 PRTN3P24158 256 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 SNRPGP62308 76 aaKnown RBP12.94□□□□□ -0.34
VPS39-203ENST00000561797 ZNF788Q6ZQV5 615 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 C9orf139Q6ZV77 190 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 FAM220AQ7Z4H9 259 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 ANGPTL6Q8NI99 470 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 LHX4Q969G2 390 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 MED30Q96HR3 178 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 C1orf147Q96MC9 270 aaPredicted RBP12.94□□□□□ -0.34
VPS39-203ENST00000561797 ZNF488Q96MN9 340 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 GAFA1Q96PS6 74 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 ADI1Q9BV57 179 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 CNTD2Q9H8S5 307 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 ACOXLQ9NUZ1 547 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 ONECUT1Q9UBC0 465 aa12.94□□□□□ -0.34
VPS39-203ENST00000561797 CENPVL3A0A0U1RRI6 287 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 DAPL1A0PJW8 107 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 TMEM89A2RUT3 159 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 E9PQ18 207 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 DLGAP1O14490 977 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 SYT7O43581 403 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 SYNGR1O43759 233 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 HAAOP46952 286 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 IL13RA1P78552 427 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 OCLNQ16625 522 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 DGUOKQ16854 277 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 DEFB112Q30KQ8 113 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 C11orf91Q3C1V1 193 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 MEDAGQ5VYS4 303 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 TMEM42Q69YG0 159 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 ZBTB49Q6ZSB9 765 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 Q6ZSR3 168 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 PDZD9Q8IXQ8 264 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 BATF2Q8N1L9 274 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 PQLC1Q8N2U9 271 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 PRSS35Q8N3Z0 413 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 TRMT10AQ8TBZ6 339 aaKnown RBP12.93□□□□□ -0.34
VPS39-203ENST00000561797 NPRL2Q8WTW4 380 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 ZDHHC16Q969W1 377 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 DNTTIP1Q9H147 329 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 PLEKHA1Q9HB21 404 aa12.93□□□□□ -0.34
VPS39-203ENST00000561797 SLC25A10Q9UBX3 287 aaPredicted RBP12.93□□□□□ -0.34
VPS39-203ENST00000561797 IGKV1D-17A0A075B6S4 117 aa12.92□□□□□ -0.34
VPS39-203ENST00000561797 FAM230AA0A1W2PPH8 454 aa12.92□□□□□ -0.34
VPS39-203ENST00000561797 ACAA1P09110 424 aaPredicted RBP12.92□□□□□ -0.34
VPS39-203ENST00000561797 PSG2P11465 335 aa12.92□□□□□ -0.34
VPS39-203ENST00000561797 NDUFB7P17568 137 aa12.92□□□□□ -0.34
VPS39-203ENST00000561797 CCL1P22362 96 aa12.92□□□□□ -0.34
VPS39-203ENST00000561797 KIR3DL2P43630 455 aa12.92□□□□□ -0.34
VPS39-203ENST00000561797 PDCD1Q15116 288 aa12.92□□□□□ -0.34
VPS39-203ENST00000561797 SLC9A3R2Q15599 337 aa12.92□□□□□ -0.34
VPS39-203ENST00000561797 SLC25A30Q5SVS4 291 aa12.92□□□□□ -0.34
VPS39-203ENST00000561797 VMO1Q7Z5L0 202 aa12.92□□□□□ -0.34
VPS39-203ENST00000561797 ANGPTL5Q86XS5 388 aa12.92□□□□□ -0.34
VPS39-203ENST00000561797 ZNF573Q86YE8 665 aa12.92□□□□□ -0.34
VPS39-203ENST00000561797 RDH10Q8IZV5 341 aa12.92□□□□□ -0.34
VPS39-203ENST00000561797 LY6G5BQ8NDX9 201 aa12.92□□□□□ -0.34
VPS39-203ENST00000561797 DCTN5Q9BTE1 182 aa12.92□□□□□ -0.34
VPS39-203ENST00000561797 ELL3Q9HB65 397 aaPredicted RBP12.92□□□□□ -0.34
VPS39-203ENST00000561797 PQLC2LA1A4F0 135 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 ANKRD61A6NGH8 418 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 SNTNA6NMZ2 147 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 DHRS7CA6NNS2 312 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 J3QT63 122 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 GPR37O15354 613 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 SIGLEC5O15389 551 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 CFPP27918 469 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 OR12D2P58182 307 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 BPIFB3P59826 476 aa12.91□□□□□ -0.34
VPS39-203ENST00000561797 ISL1P61371 349 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms