RNA–Protein interactions for RNA: ENST00000561431.1

LRRC28-222, Transcript of leucine rich repeat containing 28, human

TSL 3

Gene LRRC28, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRC28-222	ENST00000561431	TMEM109	Q9BVC6	243 aa		3.38	□□□□□ -1.87
LRRC28-222	ENST00000561431	MRPS26	Q9BYN8	205 aa	Known RBP	3.38	□□□□□ -1.87
LRRC28-222	ENST00000561431	PCBD2	Q9H0N5	130 aa		3.38	□□□□□ -1.87
LRRC28-222	ENST00000561431	OR51M1	Q9H341	326 aa		3.38	□□□□□ -1.87
LRRC28-222	ENST00000561431	UGT1A8	Q9HAW9	530 aa		3.38	□□□□□ -1.87
LRRC28-222	ENST00000561431	RDH14	Q9HBH5	336 aa		3.38	□□□□□ -1.87
LRRC28-222	ENST00000561431	NMRAL1	Q9HBL8	299 aa		3.38	□□□□□ -1.87
LRRC28-222	ENST00000561431	TREM2	Q9NZC2	230 aa		3.38	□□□□□ -1.87
LRRC28-222	ENST00000561431	CACNG5	Q9UF02	275 aa		3.38	□□□□□ -1.87
LRRC28-222	ENST00000561431	USH1C	Q9Y6N9	552 aa		3.38	□□□□□ -1.87
LRRC28-222	ENST00000561431	KALRN	O60229	2985 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	APC2	O95996	2303 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	KNL1	Q8NG31	2342 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	LOC400499	M0QZD8	3231 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	TRBV5-4	A0A0C4DH59	114 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431		A0A1B0GUS0	222 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431		A0A1W2PR80	420 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	C15orf61	A6NNL5	157 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431		H0Y980	276 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	hCG_2039718	K7EN88	272 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	IMPA2	O14732	288 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	CASK	O14936	926 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	SLC31A2	O15432	143 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	TGOLN2	O43493	480 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	KHDRBS3	O75525	346 aa	Known RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	UGT2B17	O75795	530 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	CEACAM4	O75871	244 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	GATB	O75879	557 aa	Known RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	UTS2	O95399	124 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	CLDN1	O95832	211 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	C8orf88	P0DMB2	117 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	CCL4	P13236	92 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	ZNF35	P13682	527 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	GFAP	P14136	432 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	HIST1H1C	P16403	213 aa	Known RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	IMPDH1	P20839	514 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	MPI	P34949	423 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	DDOST	P39656	456 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	OR3A2	P47893	321 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	TMED10	P49755	219 aa	Known RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	PPOX	P50336	477 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	AP2S1	P53680	142 aa	Predicted RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	RAG2	P55895	527 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	OR4D2	P58180	307 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	RAN	P62826	216 aa	Known RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	RBX1	P62877	108 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	MFGE8	Q08431	387 aa	Predicted RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	C2orf80	Q0P641	193 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	ST3GAL3	Q11203	375 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	EIF3I	Q13347	325 aa	Known RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	POU6F1	Q14863	301 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	RPEL1	Q2QD12	228 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	KRTAP24-1	Q3LI83	254 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	RFTN2	Q52LD8	501 aa	Predicted RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	PDZD11	Q5EBL8	140 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	ACER2	Q5QJU3	275 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	ATP1A1-AS1	Q5TC04	95 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	DMKN	Q6E0U4	476 aa	Predicted RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	LEG1	Q6P5S2	330 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	EMB	Q6PCB8	327 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	WDR74	Q6RFH5	385 aa	Predicted RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	C5orf46	Q6UWT4	87 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	BTNL3	Q6UXE8	466 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	MBOAT1	Q6ZNC8	495 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431		Q6ZSR3	168 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	NUFIP2	Q7Z417	695 aa	Known RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	TMED4	Q7Z7H5	227 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	TMEM17	Q86X19	198 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	DHFR2	Q86XF0	187 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	PIANP	Q8IYJ0	282 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	LFNG	Q8NES3	379 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	OR4K2	Q8NGD2	314 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	OR4D9	Q8NGE8	314 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	OR13C4	Q8NGS5	318 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	LHFPL5	Q8TAF8	219 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	PLPPR1	Q8TBJ4	325 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	GATAD1	Q8WUU5	269 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	C1orf54	Q8WWF1	131 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	FGF11	Q92914	225 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	UPRT	Q96BW1	309 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	YIPF6	Q96EC8	236 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	CENPN	Q96H22	339 aa	Predicted RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	C2orf48	Q96LS8	159 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431		Q96MT0	163 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	RILP	Q96NA2	401 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	PPP1R2P1	Q96PQ5	205 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	OR2V2	Q96R30	315 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	SDHC	Q99643	169 aa	Predicted RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	TBL1Y	Q9BQ87	522 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	TRIM51	Q9BSJ1	452 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	HOXD1	Q9GZZ0	328 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	ING2	Q9H160	280 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	PRORY	Q9H606	182 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	ABCB9	Q9NP78	766 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	B3GAT2	Q9NPZ5	323 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	SLC2A9	Q9NRM0	540 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	CUTC	Q9NTM9	273 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	FGFR1OP2	Q9NVK5	253 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	NLE1	Q9NVX2	485 aa	Predicted RBP	3.37	□□□□□ -1.87

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