RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, human

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTF1-204	ENST00000558117	SIGLEC9	Q9Y336	463 aa		4.37	□□□□□ -1.71
RTF1-204	ENST00000558117	TRAV40	A0A0B4J280	105 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	NKX6-3	A6NJ46	265 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	ACOD1	A6NK06	481 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117		H0YHG0	523 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	SIGLEC5	O15389	551 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	NBR2	O15453	112 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	NIPSNAP2	O75323	286 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	EED	O75530	441 aa	Known RBP	4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	FOXH1	O75593	365 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	ANP32D	O95626	131 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	CAT	P04040	527 aa	Known RBP	4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	CRYGC	P07315	174 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	NPR2	P20594	1047 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	CD80	P33681	288 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	RPL22	P35268	128 aa	Known RBP	4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	FEN1	P39748	380 aa	Known RBP	4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	PLTP	P55058	493 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	PARP6	Q2NL67	630 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	DUPD1	Q68J44	220 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	TTC19	Q6DKK2	380 aa	Predicted RBP	4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	DPY19L4	Q7Z388	723 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	IFT20	Q8IY31	132 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	TMEM123	Q8N131	208 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	ZNF567	Q8N184	647 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	POM121L12	Q8N7R1	296 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	OR2M3	Q8NG83	312 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	OR4K17	Q8NGC6	315 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	OR9Q2	Q8NGE9	314 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	OR13C5	Q8NGS8	318 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	OR2V1	Q8NHB1	315 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	KCNG3	Q8TAE7	436 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	ANKRD7	Q92527	254 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	LRRC39	Q96DD0	335 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	GAL3ST1	Q99999	423 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	IQCG	Q9H095	443 aa	Known RBP	4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	NXF5	Q9H1B4	397 aa	Known RBP	4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	DSN1	Q9H410	356 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	TUBB1	Q9H4B7	451 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	TMEM185B	Q9H7F4	350 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	ZNF442	Q9H7R0	627 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	ZNF446	Q9NWS9	450 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	KLK11	Q9UBX7	282 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	GLS2	Q9UI32	602 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	ZNF639	Q9UID6	485 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	STK38L	Q9Y2H1	464 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	UTP11	Q9Y3A2	253 aa	Known RBP	4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	WDR45	Q9Y484	360 aa		4.36	□□□□□ -1.71
RTF1-204	ENST00000558117	IGLV4-3	A0A075B6K6	122 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	IGHV1-18	A0A0C4DH31	117 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117		A0A0J9YW62	118 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	CIB4	A0PJX0	185 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	LRRC30	A6NM36	301 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	TRIM49D1	C9J1S8	452 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	APOC4-APOC2	K7ER74	178 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	PRMT5	O14744	637 aa	Predicted RBP	4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	TNFSF11	O14788	317 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	TIMM8A	O60220	97 aa	Predicted RBP	4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	BANF1	O75531	89 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	MTRF1	O75570	445 aa	Known RBP	4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	LGI1	O95970	557 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	IGHM	P01871	453 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	APOC2	P02655	101 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	OPN1LW	P04000	364 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	CRYGB	P07316	175 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	CD28	P10747	220 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	UQCRB	P14927	111 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	H2AFX	P16104	143 aa	Predicted RBP	4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	TCN1	P20061	433 aa	Predicted RBP	4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	UCP1	P25874	307 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	LAP3	P28838	519 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	MAGEA8	P43361	318 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	CCT3	P49368	545 aa	Known RBP	4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	RAB10	P61026	200 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	ERVK-16	P61578	105 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	KIAA0141	Q14154	515 aa	Predicted RBP	4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	KLHL38	Q2WGJ6	581 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	GLYR1	Q49A26	553 aa	Predicted RBP	4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	ACSBG2	Q5FVE4	666 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	CLEC6A	Q6EIG7	209 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	NEPRO	Q6NW34	567 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117		Q6ZVQ6	151 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	PID1	Q7Z2X4	250 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	SLC38A6	Q8IZM9	456 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	ZNF615	Q8N8J6	731 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	BBS1	Q8NFJ9	593 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	RAB8B	Q92930	207 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	MS4A6E	Q96DS6	147 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	SH3YL1	Q96HL8	342 aa	Predicted RBP	4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	AKR1E2	Q96JD6	320 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	CHCHD5	Q9BSY4	110 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	FNDC4	Q9H6D8	234 aa	Predicted RBP	4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	C3orf14	Q9HBI5	128 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	PDE10A	Q9Y233	779 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	USH1C	Q9Y6N9	552 aa		4.35	□□□□□ -1.71
RTF1-204	ENST00000558117	IQCM	A0A1B0GVH7	501 aa		4.34	□□□□□ -1.71
RTF1-204	ENST00000558117	SUPT3H	B4E1H0	165 aa		4.34	□□□□□ -1.71
RTF1-204	ENST00000558117	RNASEK-C17orf49	H0YIS7	233 aa		4.34	□□□□□ -1.71
RTF1-204	ENST00000558117	CCS	O14618	274 aa		4.34	□□□□□ -1.71
RTF1-204	ENST00000558117	ERI3	O43414	337 aa	Known RBP	4.34	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms