RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 MRPS11P82912 194 aaKnown RBP11.85□□□□□ -0.51
VIPAS39-208ENST00000556412 HOXA4Q00056 320 aaPredicted RBP11.85□□□□□ -0.51
VIPAS39-208ENST00000556412 UNQ9370/PRO34162Q6UXP9 181 aa11.85□□□□□ -0.51
VIPAS39-208ENST00000556412 LHFPL2Q6ZUX7 228 aa11.85□□□□□ -0.51
VIPAS39-208ENST00000556412 OR5D18Q8NGL1 313 aa11.85□□□□□ -0.51
VIPAS39-208ENST00000556412 HPS1Q92902 700 aa11.85□□□□□ -0.51
VIPAS39-208ENST00000556412 ERGIC1Q969X5 290 aa11.85□□□□□ -0.51
VIPAS39-208ENST00000556412 GPER1Q99527 375 aa11.85□□□□□ -0.51
VIPAS39-208ENST00000556412 CHCHD6Q9BRQ6 235 aa11.85□□□□□ -0.51
VIPAS39-208ENST00000556412 OR51E2Q9H255 320 aa11.85□□□□□ -0.51
VIPAS39-208ENST00000556412 PPIL3Q9H2H8 161 aaKnown RBP11.85□□□□□ -0.51
VIPAS39-208ENST00000556412 METTL17Q9H7H0 456 aaPredicted RBP11.85□□□□□ -0.51
VIPAS39-208ENST00000556412 TMEM138Q9NPI0 162 aa11.85□□□□□ -0.51
VIPAS39-208ENST00000556412 STUB1Q9UNE7 303 aa11.85□□□□□ -0.51
VIPAS39-208ENST00000556412 NAV2Q8IVL1 2488 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 CLDN25C9JDP6 229 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 RP2O75695 350 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 ARL6IP5O75915 188 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 PTBP3O95758 552 aaKnown RBP11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 CSF3P09919 207 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 UCHL1P09936 223 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 FSTP19883 344 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 GADD45AP24522 165 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 BDKRB2P30411 391 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 AVPI1Q5T686 147 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 DDI2Q5TDH0 399 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 C22orf42Q6IC83 251 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 CALHM1Q8IU99 346 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 BATF2Q8N1L9 274 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 DNAAF1Q8NEP3 725 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 OR52N4Q8NGI2 321 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 LRRC29Q8WV35 223 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 TMIGD2Q96BF3 282 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 PIMREGQ9BSJ6 248 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 SLITRK2Q9H156 845 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 RNF7Q9UBF6 113 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 SCOCQ9UIL1 159 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 SSR3Q9UNL2 185 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 CACNA1DQ01668 2161 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 AKAP6Q13023 2319 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 SPG11Q96JI7 2443 aa11.84□□□□□ -0.51
VIPAS39-208ENST00000556412 ISPDA4D126 451 aa11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 RHBDL1O75783 438 aa11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 IGFBP3P17936 291 aaPredicted RBP11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 GPR6P46095 362 aaPredicted RBP11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 KISS1Q15726 138 aa11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 FAM76BQ5HYJ3 339 aa11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 FAM201AQ5SY85 155 aa11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 WDR82Q6UXN9 313 aa11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 RNF144BQ7Z419 303 aa11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 PEG10Q86TG7 708 aaKnown RBP11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 C11orf53Q8IXP5 236 aa11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 C1orf87Q8N0U7 546 aa11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 C19orf18Q8NEA5 215 aa11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 AQP3Q92482 292 aa11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 TIMD4Q96H15 378 aa11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 Q96MF0 132 aa11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 FAM192AQ9GZU8 254 aa11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 NARFLQ9H6Q4 476 aa11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 FOXJ3Q9UPW0 622 aa11.83□□□□□ -0.51
VIPAS39-208ENST00000556412 IGHV4-30-2A0A087WSY4 118 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 TRDV1A0A1B0GX56 115 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 TMEM178BH3BS89 294 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 J3QT63 122 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 AKR7A2O43488 359 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 SPRY1O43609 319 aaPredicted RBP11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 SYNGR1O43759 233 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 GPX5O75715 221 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 SRMP19623 302 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 DSCR9P59020 149 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 SHEQ5VZ18 495 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 ZNF529Q6P280 563 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 CD200R1LQ6Q8B3 271 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 SLC25A26Q70HW3 274 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 JAGN1Q8N5M9 183 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 WFDC11Q8NEX6 87 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 Q8TCH9 128 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 C10orf105Q8TEF2 133 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 CPNE2Q96FN4 548 aaPredicted RBP11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 ZNF488Q96MN9 340 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 BPESC1Q9GZL8 116 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 TLNRD1Q9H1K6 362 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 POLDIP2Q9Y2S7 368 aa11.83□□□□□ -0.52
VIPAS39-208ENST00000556412 DSCAMO60469 2012 aa11.82□□□□□ -0.52
VIPAS39-208ENST00000556412 C3orf80F5H4A9 247 aa11.82□□□□□ -0.52
VIPAS39-208ENST00000556412 IFNL4K9M1U5 179 aa11.82□□□□□ -0.52
VIPAS39-208ENST00000556412 ALX3O95076 343 aa11.82□□□□□ -0.52
VIPAS39-208ENST00000556412 CYB5AP00167 134 aa11.82□□□□□ -0.52
VIPAS39-208ENST00000556412 TFAP2AP05549 437 aa11.82□□□□□ -0.52
VIPAS39-208ENST00000556412 TMEM225BP0DP42 221 aa11.82□□□□□ -0.52
VIPAS39-208ENST00000556412 MYL9P24844 172 aa11.82□□□□□ -0.52
VIPAS39-208ENST00000556412 CD80P33681 288 aa11.82□□□□□ -0.52
VIPAS39-208ENST00000556412 ZNF93P35789 620 aaPredicted RBP11.82□□□□□ -0.52
VIPAS39-208ENST00000556412 TMEM33P57088 247 aa11.82□□□□□ -0.52
VIPAS39-208ENST00000556412 SFRP4Q6FHJ7 346 aaPredicted RBP11.82□□□□□ -0.52
VIPAS39-208ENST00000556412 GPR141Q7Z602 305 aa11.82□□□□□ -0.52
VIPAS39-208ENST00000556412 KRTAP1-3Q8IUG1 177 aa11.82□□□□□ -0.52
VIPAS39-208ENST00000556412 DEFB108BQ8NET1 73 aa11.82□□□□□ -0.52
VIPAS39-208ENST00000556412 OR13F1Q8NGS4 319 aa11.82□□□□□ -0.52
VIPAS39-208ENST00000556412 ZNF671Q8TAW3 534 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms