RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 ZANQ9Y493 2812 aa12.02□□□□□ -0.49
CCDC88C-207ENST00000554051 SETD2Q9BYW2 2564 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 PQLC2LA1A4F0 135 aa12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 C3orf80F5H4A9 247 aa12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 ADAM20O43506 726 aa12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 ENSAO43768 121 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 ECDO95905 644 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 PPIAL4GP0DN37 164 aa12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 PRKACBP22694 351 aa12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 TAS2R43P59537 309 aa12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 SMN1Q16637 294 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 ODF4Q2M2E3 257 aa12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 UTS2BQ765I0 119 aa12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 DNAAF1Q8NEP3 725 aa12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 OR52N1Q8NH53 320 aa12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 AQP3Q92482 292 aa12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 RPL3LQ92901 407 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 CPNE2Q96FN4 548 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 TMEM80Q96HE8 168 aa12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 DMRTB1Q96MA1 342 aa12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 PLCXD1Q9NUJ7 323 aa12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 FRRS1LQ9P0K9 344 aa12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 NKX1-2Q9UD57 310 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-207ENST00000554051 OR4C45A6NMZ5 311 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 KIAA1324LA8MWY0 1029 aaPredicted RBP12□□□□□ -0.49
CCDC88C-207ENST00000554051 ZNF205O95201 554 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 LIPFP07098 398 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 OCM2P0CE71 109 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 OCMP0CE72 109 aaPredicted RBP12□□□□□ -0.49
CCDC88C-207ENST00000554051 LIMS3P0CW19 117 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 LIMS4P0CW20 117 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 GLRA1P23415 457 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 MPZP25189 248 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 HAAOP46952 286 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 FUT6P51993 359 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 FAM201AQ5SY85 155 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 ATPAF1Q5TC12 328 aaPredicted RBP12□□□□□ -0.49
CCDC88C-207ENST00000554051 WDR25Q64LD2 544 aaPredicted RBP12□□□□□ -0.49
CCDC88C-207ENST00000554051 SFRP4Q6FHJ7 346 aaPredicted RBP12□□□□□ -0.49
CCDC88C-207ENST00000554051 RPL22L1Q6P5R6 122 aaKnown RBP12□□□□□ -0.49
CCDC88C-207ENST00000554051 HAGHLQ6PII5 290 aaPredicted RBP12□□□□□ -0.49
CCDC88C-207ENST00000554051 C1QL2Q7Z5L3 287 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 DEFB108BQ8NET1 73 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 OR13C3Q8NGS6 347 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 OR5AK2Q8NH90 309 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 NANPQ8TBE9 248 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 PPP1R14AQ96A00 147 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 TMIGD2Q96BF3 282 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 BORCS8Q96FH0 119 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 ZNF649Q9BS31 505 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 GPR173Q9NS66 373 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 NLKQ9UBE8 527 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 INSIG2Q9Y5U4 225 aa12□□□□□ -0.49
CCDC88C-207ENST00000554051 IGHV2-70DA0A0C4DH43 119 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 MYL12BO14950 172 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 TMPRSS2O15393 492 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 CYB5AP00167 134 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 CD2P06729 351 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 ACAA1P09110 424 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 EGR1P18146 543 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 ZFP36P26651 326 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 AQP4P55087 323 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 NANOS3P60323 173 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 SEC61A1P61619 476 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 IL24Q13007 206 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 LRRC10Q5BKY1 277 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 STUMQ69YW2 141 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 LHFPL2Q6ZUX7 228 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 Q8IYB0 196 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 POC1AQ8NBT0 407 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 RAB40AQ8WXH6 277 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 THRSPQ92748 146 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 RNF166Q96A37 237 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 MED30Q96HR3 178 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 TMPRSS13Q9BYE2 586 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 FGF23Q9GZV9 251 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 C7orf69Q9H7B7 122 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 METTL17Q9H7H0 456 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 PPP1R3EQ9H7J1 279 aa11.99□□□□□ -0.49
CCDC88C-207ENST00000554051 LOC105371242A0A075B767 164 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 TRBV2A0A0J9YWF9 115 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 PHF1O43189 567 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 NOS1APO75052 506 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 GYPAP02724 150 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 MT-ND2P03891 347 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 GNAO1P09471 354 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 PGA5P0DJD9 388 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 RBP2P50120 134 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 ATP1B3P54709 279 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 IL13RA1P78552 427 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 CDK5R1Q15078 307 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 ARMCX4Q5H9R4 360 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 FIP1L1Q6UN15 594 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 STX19Q8N4C7 294 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 PNLDC1Q8NA58 520 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 TSEN15Q8WW01 171 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 SMIM19Q96E16 107 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 ANKRD60Q9BZ19 345 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 ISG20L2Q9H9L3 353 aaKnown RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms