RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 FUT7Q11130 342 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 MFAP5Q13361 173 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF124Q15973 351 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 HIST2H2BEQ16778 126 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 C1orf140Q5VVS0 124 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 LHFPL1Q86WI0 220 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 OR5AS1Q8N127 324 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 CA5BP1Q8WTZ4 195 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 HIST1H2BHQ93079 126 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 MISP3Q96FF7 219 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 HIST1H2BNQ99877 126 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 HIST1H2BMQ99879 126 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 LRRC61Q9BV99 259 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 SUCNR1Q9BXA5 334 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 TWSG1Q9GZX9 223 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 CUTCQ9NTM9 273 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 PARPBPQ9NWS1 579 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 NPIPA1Q9UND3 350 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 OSGIN2Q9Y236 505 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 KIAA2026Q5HYC2 2103 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 GPR179Q6PRD1 2367 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 C2orf16Q68DN1 1984 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 SPTY2D1-AS1A0A0U1RR47 76 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 DHRS7CA6NNS2 312 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 CEACAM18A8MTB9 384 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 CDRT15L2A8MXV6 281 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 SHISA8B8ZZ34 492 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 PHYHO14832 338 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 DEDDO75618 318 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 MBPP02686 304 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 ISG15P05161 165 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 DANCRP0C864 163 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 HIST1H1DP16402 221 aaKnown RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 FBLP22087 321 aaKnown RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 LMO1P25800 156 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 SFTPDP35247 375 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF93P35789 620 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 OR1D5P58170 312 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 FZD2Q14332 565 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 COL19A1Q14993 1142 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 C4orf17Q53FE4 359 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 KHDC3LQ587J8 217 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 KCTD18Q6PI47 426 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 PLXDC2Q6UX71 529 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 HIST2H3AQ71DI3 136 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 C17orf78Q8N4C9 275 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 OR56B1Q8NGI3 324 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 PTPMT1Q8WUK0 201 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 PTX4Q96A99 478 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 MUCL1Q96DR8 90 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 TCEAL7Q9BRU2 100 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 S1PR5Q9H228 398 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 TUBA4BQ9H853 241 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 LMAN1LQ9HAT1 526 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 EHFQ9NZC4 300 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 VSX1Q9NZR4 365 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF407Q9C0G0 2248 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 IGKV1-9A0A0C4DH69 117 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 PLPP3O14495 311 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 SYT7O43581 403 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 CDC14BO60729 498 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 NSA2O95478 260 aaKnown RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 TRGC2P03986 189 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 JMJD7P0C870 316 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 PGCP20142 388 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 CD38P28907 300 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 CDAP32320 146 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 SNU13P55769 128 aaKnown RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 UCP2P55851 309 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 SLC37A1P57057 533 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 MRPS21P82921 87 aaKnown RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 POU3F1Q03052 451 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 GLO1Q04760 184 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 ELOBQ15370 118 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 VAX1Q5SQQ9 334 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 FAM69BQ5VUD6 431 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 GGNBP1Q5YKI7 109 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 KIAA0895LQ68EN5 471 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 RPUSD3Q6P087 351 aaKnown RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 KLHL24Q6TFL4 600 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 DBX2Q6ZNG2 339 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 MAMDC2Q7Z304 686 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 SLC22A24Q8N4F4 322 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 DTWD2Q8NBA8 298 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 OR52M1Q8NGK5 317 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 ABHD5Q8WTS1 349 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 DAZLQ92904 295 aaKnown RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 MALSU1Q96EH3 234 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 ZDHHC12Q96GR4 267 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 PRRX2Q99811 253 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 GABRG3Q99928 467 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 PBOV1Q9GZY1 135 aa4.27□□□□□ -1.73
LIMA1-214ENST00000552783 MCTS1Q9ULC4 181 aaKnown RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 CNOT1A5YKK6 2376 aaKnown RBP4.27□□□□□ -1.73
LIMA1-214ENST00000552783 LTBP2Q14767 1821 aa4.26□□□□□ -1.73
LIMA1-214ENST00000552783 MEGF11A6BM72 1044 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms