RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 KCNJ8Q15842 424 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 PNLIPRP3Q17RR3 467 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 BEND6Q5SZJ8 279 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-204ENST00000549064 DHRS4L2Q6PKH6 230 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 C10orf99Q6UWK7 81 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 FOXL2NBQ6ZUU3 175 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 TMEM219Q86XT9 240 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 FAM216BQ8N7L0 139 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 MOSPD2Q8NHP6 518 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 HIST1H2ACQ93077 130 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 TMEM18Q96B42 140 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 CCL13Q99616 98 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 MCHR1Q99705 422 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 TSPYL1Q9H0U9 437 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 INIPQ9NRY2 104 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 TMEM100Q9NV29 134 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 ZNF229Q9UJW7 825 aa5.19□□□□□ -1.58
LIMA1-204ENST00000549064 A0A1B0GWJ7 208 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 ZNF320A2RRD8 509 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 CPSF4LA6NMK7 179 aaKnown RBP5.18□□□□□ -1.58
LIMA1-204ENST00000549064 C12orf71A8MTZ7 269 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 C5orf58C9J3I9 102 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 H7C1C5 153 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 ITM2AO43736 263 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 CHP2O43745 196 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 ANP32DO95626 131 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 TFF1P04155 84 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 SHBGP04278 402 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 SERPINE1P05121 402 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 ETS2P15036 469 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 MSR1P21757 451 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 VDAC2P45880 294 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-204ENST00000549064 RAB13P51153 203 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 DAP3P51398 398 aaKnown RBP5.18□□□□□ -1.58
LIMA1-204ENST00000549064 LCN6P62502 163 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 ACSM1Q08AH1 577 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 LRRC74AQ0VAA2 488 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 SCRN3Q0VDG4 424 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 RGNQ15493 299 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 NPTX1Q15818 432 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 HHATQ5VTY9 493 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 PLBD1Q6P4A8 553 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 TEX38Q6PEX7 206 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 TTC33Q6PID6 262 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-204ENST00000549064 GCSAMQ8N6F7 178 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 ZNF781Q8N8C0 355 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 BCAS4Q8TDM0 211 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 H1FXQ92522 213 aaKnown RBP5.18□□□□□ -1.58
LIMA1-204ENST00000549064 MYDGFQ969H8 173 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 FAM162AQ96A26 154 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 RASD2Q96D21 266 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 SEH1LQ96EE3 360 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 ZNF583Q96ND8 569 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 GPR61Q9BZJ8 451 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 PRSS22Q9GZN4 317 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 RAD21L1Q9H4I0 556 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 MEPEQ9NQ76 525 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-204ENST00000549064 POLE4Q9NR33 117 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 C1orf123Q9NWV4 160 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 KAAG1Q9UBP8 84 aa5.18□□□□□ -1.58
LIMA1-204ENST00000549064 PRPF19Q9UMS4 504 aaKnown RBP5.18□□□□□ -1.58
LIMA1-204ENST00000549064 TSSC4Q9Y5U2 329 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-204ENST00000549064 TRBV5-3A0A0A0MS03 114 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 OR6C6A6NF89 314 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 ACOT8O14734 319 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 NDUFA2O43678 99 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 BAG2O95816 211 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 CLIC3O95833 236 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 LHBP01229 141 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 LBPP18428 481 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 FUT1P19526 365 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 CA6P23280 308 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 AQP1P29972 269 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 WDR38Q5JTN6 314 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 NCR3LG1Q68D85 454 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 ZNF613Q6PF04 617 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 TRMT10CQ7L0Y3 403 aaKnown RBP5.17□□□□□ -1.58
LIMA1-204ENST00000549064 HDDC2Q7Z4H3 204 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 CENPVQ7Z7K6 275 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-204ENST00000549064 RBM45Q8IUH3 476 aaKnown RBP5.17□□□□□ -1.58
LIMA1-204ENST00000549064 SBSPONQ8IVN8 264 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 DYNAPQ8N1N2 210 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 SMYD1Q8NB12 490 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 TSPAN14Q8NG11 270 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 OR4D11Q8NGI4 311 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 OR1F12Q8NHA8 337 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 PFN4Q8NHR9 129 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 TCP10LQ8TDR4 215 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 ADAMTS16Q8TE57 1224 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 APOBEC3DQ96AK3 386 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-204ENST00000549064 LYZL4Q96KX0 146 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 ZIM3Q96PE6 472 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 ZNF649Q9BS31 505 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 PPIL3Q9H2H8 161 aaKnown RBP5.17□□□□□ -1.58
LIMA1-204ENST00000549064 AIG1Q9NVV5 245 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 ADA2Q9NZK5 511 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 SLC7A7Q9UM01 511 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 TCF19Q9Y242 345 aa5.17□□□□□ -1.58
LIMA1-204ENST00000549064 A0A0B4J293 547 aa5.16□□□□□ -1.58
LIMA1-204ENST00000549064 A4D1N5 150 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms