RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 GPM6AP51674 278 aa13.64□□□□□ -0.23
VPS29-204ENST00000548259 SSX2Q16385 188 aa13.64□□□□□ -0.23
VPS29-204ENST00000548259 KLHL12Q53G59 568 aa13.64□□□□□ -0.23
VPS29-204ENST00000548259 SHFQ7M4L6 423 aa13.64□□□□□ -0.23
VPS29-204ENST00000548259 AKR1E2Q96JD6 320 aa13.64□□□□□ -0.23
VPS29-204ENST00000548259 EGLN3Q9H6Z9 239 aa13.64□□□□□ -0.23
VPS29-204ENST00000548259 ZNF222Q9UK12 451 aa13.64□□□□□ -0.23
VPS29-204ENST00000548259 SYNGR1O43759 233 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 NHLRC4P0CG21 123 aaPredicted RBP13.63□□□□□ -0.23
VPS29-204ENST00000548259 PSKH1P11801 424 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 DCTDP32321 178 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 DYNLT3P51808 116 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 KLHL22Q53GT1 634 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 SAMD4BQ5PRF9 694 aaKnown RBP13.63□□□□□ -0.23
VPS29-204ENST00000548259 CCBE1Q6UXH8 406 aaPredicted RBP13.63□□□□□ -0.23
VPS29-204ENST00000548259 PRSS45Q7RTY3 260 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 LHFPL4Q7Z7J7 247 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 LINC00471Q8N535 108 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 OR4X2Q8NGF9 303 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 OR6N2Q8NGY6 317 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 OR2T27Q8NH04 317 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 ZNRF4Q8WWF5 429 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 ITFG2Q969R8 447 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 PYURFQ96I23 114 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 INTS14Q96SY0 518 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 ABHD6Q9BV23 337 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 MUC13Q9H3R2 512 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 VIPAS39Q9H9C1 493 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 TBC1D23Q9NUY8 699 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 BAIAP2Q9UQB8 552 aa13.63□□□□□ -0.23
VPS29-204ENST00000548259 ZNF732B4DXR9 585 aa13.62□□□□□ -0.23
VPS29-204ENST00000548259 GYPBP06028 91 aa13.62□□□□□ -0.23
VPS29-204ENST00000548259 COX4I1P13073 169 aa13.62□□□□□ -0.23
VPS29-204ENST00000548259 SPI1P17947 270 aa13.62□□□□□ -0.23
VPS29-204ENST00000548259 EGFEM1PQ0D2K5 195 aa13.62□□□□□ -0.23
VPS29-204ENST00000548259 CRMP1Q14194 572 aa13.62□□□□□ -0.23
VPS29-204ENST00000548259 HACD2Q6Y1H2 254 aa13.62□□□□□ -0.23
VPS29-204ENST00000548259 ZNF782Q6ZMW2 699 aaPredicted RBP13.62□□□□□ -0.23
VPS29-204ENST00000548259 CCDC121Q6ZUS5 278 aa13.62□□□□□ -0.23
VPS29-204ENST00000548259 ERI1Q8IV48 349 aaKnown RBP13.62□□□□□ -0.23
VPS29-204ENST00000548259 OR51I2Q9H344 312 aa13.62□□□□□ -0.23
VPS29-204ENST00000548259 IL20Q9NYY1 176 aa13.62□□□□□ -0.23
VPS29-204ENST00000548259 V9GYQ6 96 aa13.62□□□□□ -0.23
VPS29-204ENST00000548259 OR5B21A6NL26 309 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 RFPL4AA6NLU0 287 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 RIIAD1A6NNX1 92 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 RFPL4AL1F8VTS6 287 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 MTRF1O75570 445 aaKnown RBP13.61□□□□□ -0.23
VPS29-204ENST00000548259 KRT36O76013 467 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 FABP3P05413 133 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 ZNF3P17036 446 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 ACKR3P25106 362 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 RRM2P31350 389 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 PRDX2P32119 198 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 OPRL1P41146 370 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 MAP2K3P46734 347 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 KRTAP10-11P60412 298 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 BLCAPP62952 87 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 SF3A3Q12874 501 aaKnown RBP eCLIP13.61□□□□□ -0.23
VPS29-204ENST00000548259 DYNC1I2Q13409 638 aaKnown RBP13.61□□□□□ -0.23
VPS29-204ENST00000548259 CEACAM21Q3KPI0 293 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 KHDC1LQ5JSQ8 128 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 UNQ9370/PRO34162Q6UXP9 181 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 OR4M1Q8NGD0 313 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 HPSE2Q8WWQ2 592 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 MCRIP2Q9BUT9 160 aaKnown RBP13.61□□□□□ -0.23
VPS29-204ENST00000548259 SPAG4Q9NPE6 437 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 IL1RAPQ9NPH3 570 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 FGFR1OP2Q9NVK5 253 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 ZNF319Q9P2F9 582 aa13.61□□□□□ -0.23
VPS29-204ENST00000548259 CCDC22O60826 627 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 RBP4P02753 201 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 CCL3L1P16619 93 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 GSTT1P30711 240 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 SLC34A1Q06495 639 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 ZNF626Q68DY1 528 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 LCN8Q6JVE9 175 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 C8orf82Q6P1X6 216 aaPredicted RBP13.6□□□□□ -0.23
VPS29-204ENST00000548259 ACP7Q6ZNF0 438 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 RASSF6Q6ZTQ3 369 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 C16orf82Q7Z2V1 217 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 C11orf42Q8N5U0 333 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 OR2T33Q8NG76 320 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 OR51D1Q8NGF3 324 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 OR5A2Q8NGI9 324 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 CHID1Q9BWS9 393 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 TSSK6Q9BXA6 273 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 NMNAT2Q9BZQ4 307 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 NIPAL2Q9H841 368 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 GORASP2Q9H8Y8 452 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 ABCD2Q9UBJ2 740 aa13.6□□□□□ -0.23
VPS29-204ENST00000548259 HOXD3P31249 432 aaPredicted RBP13.59□□□□□ -0.23
VPS29-204ENST00000548259 ARHGDIBP52566 201 aa13.59□□□□□ -0.23
VPS29-204ENST00000548259 PSME3P61289 254 aa13.59□□□□□ -0.23
VPS29-204ENST00000548259 IL18R1Q13478 541 aa13.59□□□□□ -0.23
VPS29-204ENST00000548259 TMEM95Q3KNT9 176 aa13.59□□□□□ -0.23
VPS29-204ENST00000548259 MINOS1Q5TGZ0 78 aa13.59□□□□□ -0.23
VPS29-204ENST00000548259 HAGHLQ6PII5 290 aaPredicted RBP13.59□□□□□ -0.23
VPS29-204ENST00000548259 DYNAPQ8N1N2 210 aa13.59□□□□□ -0.23
VPS29-204ENST00000548259 OR11H6Q8NGC7 330 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms