RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	AIMP2	Q13155	320 aa	Known RBP	13.2	□□□□□ -0.3
CHFR-223	ENST00000544268	H1FNT	Q75WM6	255 aa	Predicted RBP	13.2	□□□□□ -0.3
CHFR-223	ENST00000544268	OR52N4	Q8NGI2	321 aa		13.2	□□□□□ -0.3
CHFR-223	ENST00000544268	OR10R2	Q8NGX6	335 aa		13.2	□□□□□ -0.3
CHFR-223	ENST00000544268	GPX8	Q8TED1	209 aa		13.2	□□□□□ -0.3
CHFR-223	ENST00000544268	SEC22A	Q96IW7	307 aa		13.2	□□□□□ -0.3
CHFR-223	ENST00000544268	GPR87	Q9BY21	358 aa		13.2	□□□□□ -0.3
CHFR-223	ENST00000544268	CNTD2	Q9H8S5	307 aa		13.2	□□□□□ -0.3
CHFR-223	ENST00000544268	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	13.2	□□□□□ -0.3
CHFR-223	ENST00000544268	CEP250	Q9BV73	2442 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	ANKUB1	A6NFN9	424 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	CD2	P06729	351 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	HLA-G	P17693	338 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	RAB4B	P61018	213 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	SSBP1	Q04837	148 aa	Known RBP	13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	MYBPH	Q13203	477 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	CD163	Q86VB7	1156 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	RPS19BP1	Q86WX3	136 aa	Known RBP	13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	ZNF248	Q8NDW4	579 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	POC1B	Q8TC44	478 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	RSRP1	Q9BUV0	290 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	RHBDD3	Q9Y3P4	386 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	C5orf63	A6NC05	138 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	CRABP1	P29762	137 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	SFTPD	P35247	375 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	PRKX	P51817	358 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	SCAND1	P57086	179 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	MLF1	P58340	268 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	PRAMEF20	Q5VT98	475 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	NUDCD2	Q8WVJ2	157 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	SSX3	Q99909	188 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	SERINC1	Q9NRX5	453 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	PPP4R1L	Q9P1A2	415 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	CKLF	Q9UBR5	152 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	IL17B	Q9UHF5	180 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	HHLA2	Q9UM44	414 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	WIF1	Q9Y5W5	379 aa		13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	PTPRZ1	P23471	2315 aa	Predicted RBP	13.19	□□□□□ -0.3
CHFR-223	ENST00000544268	LIPT2	A6NK58	231 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	ITGA3	P26006	1051 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	GNAL	P38405	381 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	SSR4	P51571	173 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	PMPCA	Q10713	525 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	DHRS2	Q13268	280 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	PNLIPRP3	Q17RR3	467 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	SCGB2B2	Q4G0G5	96 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	OPN5	Q6U736	354 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	PAQR4	Q8N4S7	273 aa	Predicted RBP	13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	KDF1	Q8NAX2	398 aa	Predicted RBP	13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	RAB3C	Q96E17	227 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	SAT2	Q96F10	170 aa	Predicted RBP	13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	RIMS4	Q9H426	269 aa	Predicted RBP	13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	CHST11	Q9NPF2	352 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	TIMM10B	Q9Y5J6	103 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	DOCK10	Q96BY6	2186 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	TTR	P02766	147 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	AMY2A	P04746	511 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	H2BFM	P0C1H6	154 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	RAB5A	P20339	215 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	GLP1R	P43220	463 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	UNC119	Q13432	240 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	DPPA2	Q7Z7J5	298 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	ANGPTL5	Q86XS5	388 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	ARRDC1	Q8N5I2	433 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	OR1J2	Q8NGS2	313 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	TMED6	Q8WW62	240 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	MALSU1	Q96EH3	234 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	POTEKP	Q9BYX7	375 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	ZNF319	Q9P2F9	582 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	LPAR3	Q9UBY5	353 aa		13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	NOP16	Q9Y3C1	178 aa	Known RBP	13.18	□□□□□ -0.3
CHFR-223	ENST00000544268	MFNG	O00587	321 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	CCS	O14618	274 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	TP53I11	O14683	189 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	RAB3D	O95716	219 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	CD5	P06127	495 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	ACKR3	P25106	362 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	G0S2	P27469	103 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	ZNF468	Q5VIY5	522 aa	Predicted RBP	13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	ETV3L	Q6ZN32	361 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	ASCL5	Q7RTU5	278 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	TMEM156	Q8N614	296 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	OR10H5	Q8NGA6	315 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	TMEM234	Q8WY98	164 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	ZBTB8A	Q96BR9	441 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	SLAMF6	Q96DU3	332 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	SLC6A7	Q99884	636 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	HRH4	Q9H3N8	390 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	RPS10P5	Q9NQ39	176 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	FAM206A	Q9NX38	181 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	CACFD1	Q9UGQ2	172 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268		G3V3Y1	287 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	ZNF208	O43345	1280 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	RBP2	P50120	134 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	SUMO3	P55854	103 aa	Predicted RBP	13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	LYPD6	Q86Y78	171 aa		13.17	□□□□□ -0.3
CHFR-223	ENST00000544268	OR13C9	Q8NGT0	318 aa		13.17	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms