RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	ZNF420	Q8TAQ5	688 aa	Predicted RBP	8.59	□□□□□ -1.03
CPSF7-221	ENST00000543545	HPS1	Q92902	700 aa		8.59	□□□□□ -1.03
CPSF7-221	ENST00000543545	YIPF5	Q969M3	257 aa		8.59	□□□□□ -1.03
CPSF7-221	ENST00000543545	ERGIC1	Q969X5	290 aa		8.59	□□□□□ -1.03
CPSF7-221	ENST00000543545	RFT1	Q96AA3	541 aa		8.59	□□□□□ -1.03
CPSF7-221	ENST00000543545	CPNE2	Q96FN4	548 aa	Predicted RBP	8.59	□□□□□ -1.03
CPSF7-221	ENST00000543545	FUNDC2	Q9BWH2	189 aa		8.59	□□□□□ -1.03
CPSF7-221	ENST00000543545	PPIL3	Q9H2H8	161 aa	Known RBP	8.59	□□□□□ -1.03
CPSF7-221	ENST00000543545	OR51I2	Q9H344	312 aa		8.59	□□□□□ -1.03
CPSF7-221	ENST00000543545	ELL3	Q9HB65	397 aa	Predicted RBP	8.59	□□□□□ -1.03
CPSF7-221	ENST00000543545	GCM1	Q9NP62	436 aa		8.59	□□□□□ -1.03
CPSF7-221	ENST00000543545	TMEM106B	Q9NUM4	274 aa		8.59	□□□□□ -1.03
CPSF7-221	ENST00000543545	CACNG2	Q9Y698	323 aa		8.59	□□□□□ -1.03
CPSF7-221	ENST00000543545	NOTCH2	Q04721	2471 aa		8.59	□□□□□ -1.03
CPSF7-221	ENST00000543545	IFNL4	K9M1U5	179 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	PDCD5	O14737	125 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	PPIH	O43447	177 aa	Known RBP	8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	SC5D	O75845	299 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	CYB5R3	P00387	301 aa	Predicted RBP	8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	TMEM225B	P0DP42	221 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	IGFBP3	P17936	291 aa	Predicted RBP	8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	FST	P19883	344 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	GAL	P22466	123 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	ZNF93	P35789	620 aa	Predicted RBP	8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	PMEL	P40967	661 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	GATA4	P43694	442 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	MRPS11	P82912	194 aa	Known RBP	8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	KISS1	Q15726	138 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	GPR107	Q5VW38	600 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	GLT8D1	Q68CQ7	371 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	ASPHD2	Q6ICH7	369 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	CD200R1L	Q6Q8B3	271 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	GDPGP1	Q6ZNW5	385 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	SLC25A26	Q70HW3	274 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	TGIF2LY	Q8IUE0	185 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	C1orf87	Q8N0U7	546 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	LRRC75A-AS1	Q8N1F1	130 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	ZNF525	Q8N782	197 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	OR5D18	Q8NGL1	313 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	LRRC29	Q8WV35	223 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	FAM168A	Q92567	244 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	TIMD4	Q96H15	378 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	KCTD7	Q96MP8	289 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	S100A13	Q99584	98 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	FAM192A	Q9GZU8	254 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	CHODL	Q9H9P2	273 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	MYOZ1	Q9NP98	299 aa	Predicted RBP	8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	TXNL4B	Q9NX01	149 aa	Known RBP	8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	RNF7	Q9UBF6	113 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	ING4	Q9UNL4	249 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	POLDIP2	Q9Y2S7	368 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	AK6	Q9Y3D8	172 aa	Known RBP	8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	ABCA12	Q86UK0	2595 aa		8.58	□□□□□ -1.04
CPSF7-221	ENST00000543545	NAV2	Q8IVL1	2488 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	CENPE	Q02224	2701 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	IGKV1-27	A0A075B6S5	117 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	ISPD	A4D126	451 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	TRIM64B	A6NI03	449 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	CLDN25	C9JDP6	229 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545		J3QT63	122 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	AKR7A2	O43488	359 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	SPRY1	O43609	319 aa	Predicted RBP	8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	NOL3	O60936	208 aa	Known RBP	8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	RHBDL1	O75783	438 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	ZNF205	O95201	554 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	PTBP3	O95758	552 aa	Known RBP	8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	ALDOB	P05062	364 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	CSF3	P09919	207 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	FGF9	P31371	208 aa	Predicted RBP	8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	RBMX	P38159	391 aa	Known RBP	8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	GPR6	P46095	362 aa	Predicted RBP	8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	ART1	P52961	327 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	TMEM33	P57088	247 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	DSCR9	P59020	149 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	HNRNPA0	Q13151	305 aa	Known RBP	8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	CLEC12B	Q2HXU8	276 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	FAM76B	Q5HYJ3	339 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545		Q5PR19	223 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	AVPI1	Q5T686	147 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	ZNF529	Q6P280	563 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	LRRTM1	Q86UE6	522 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	CALHM1	Q8IU99	346 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	CLVS1	Q8IUQ0	354 aa	Predicted RBP	8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	C11orf53	Q8IXP5	236 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	MKX	Q8IYA7	352 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	BATF2	Q8N1L9	274 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	NKAIN3	Q8N8D7	197 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	PNLDC1	Q8NA58	520 aa	Known RBP	8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	DEFB108B	Q8NET1	73 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	OR51F2	Q8NH61	342 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545		Q8TCH9	128 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	TNFAIP8L1	Q8WVP5	186 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	AQP3	Q92482	292 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	RAB1C	Q92928	201 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	FOXRED1	Q96CU9	486 aa	Predicted RBP	8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	NKX3-1	Q99801	234 aa	Predicted RBP	8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	CENPO	Q9BU64	300 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	METTL17	Q9H7H0	456 aa	Predicted RBP	8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	DCAF16	Q9NXF7	216 aa		8.57	□□□□□ -1.04
CPSF7-221	ENST00000543545	CELSR2	Q9HCU4	2923 aa		8.57	□□□□□ -1.04

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms