RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 PLEKHN1Q494U1 663 aaPredicted RBP8.62□□□□□ -1.03
SS18-205ENST00000542420 KCNRGQ8N5I3 272 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 TMEM104Q8NE00 496 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 OR51T1Q8NGJ9 327 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 OR5H2Q8NGV7 314 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 MRGPRFQ96AM1 343 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 PHYHIPLQ96FC7 376 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 THOC3Q96J01 351 aaKnown RBP8.62□□□□□ -1.03
SS18-205ENST00000542420 Q96M66 194 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 FER1L6-AS2Q96M78 137 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 NICN1Q9BSH3 213 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 NMES1Q9C002 83 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 OR2H1Q9GZK4 316 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 OPA3Q9H6K4 179 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 GP6Q9HCN6 339 aa8.62□□□□□ -1.03
SS18-205ENST00000542420 NOP16Q9Y3C1 178 aaKnown RBP8.62□□□□□ -1.03
SS18-205ENST00000542420 TNRC18O15417 2968 aaPredicted RBP8.61□□□□□ -1.03
SS18-205ENST00000542420 A0A0G2JMM0 328 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 A0A1W2PPB8 328 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 A0A1W2PRS3 328 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 FAM90A10PA6NDY2 464 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 FAM90A18PA6NE21 464 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 FAM90A16PA6NEW6 464 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 FAM90A20PA6NIJ5 464 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 FAM90A8PA6NJQ4 464 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 FAM90A7PA6NKC0 464 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 FAM90A22PA8MWA6 464 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 KIR3DP1A8MWS1 328 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 FAM90A12PA8MX19 464 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 FAM90A5PA8MXJ8 464 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 FAM90A23PA8MXZ1 464 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 SOCS1O15524 211 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 MT-CO3P00414 261 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 FAM90A15PP0C7V4 464 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 FAM90A13PP0C7W8 464 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 FAM90A14PP0C7W9 464 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 FAM90A24PP0C7X0 464 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 RPS18P62269 152 aaKnown RBP8.61□□□□□ -1.03
SS18-205ENST00000542420 C2orf68Q2NKX9 166 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 GSG1LQ6UXU4 331 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 TMED4Q7Z7H5 227 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 ZSCAN4Q8NAM6 433 aaPredicted RBP8.61□□□□□ -1.03
SS18-205ENST00000542420 OR4S1Q8NGB4 309 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 PIGTQ969N2 578 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 CMBLQ96DG6 245 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 REEP6Q96HR9 211 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 SOX7Q9BT81 388 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 C1QTNF5Q9BXJ0 243 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 PECRQ9BY49 303 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 CRLF2Q9HC73 371 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 RAB18Q9NP72 206 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 DEPPQ9NTK1 212 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 DECR2Q9NUI1 292 aa8.61□□□□□ -1.03
SS18-205ENST00000542420 TRBV6-7A0A0A0MS04 114 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 TRAV14DV4A0A0A6YYC5 116 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 OR5H14A6NHG9 310 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 FIGNL2A6NMB9 653 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 KRBOX1C9JBD0 128 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 E9PLN8 166 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 STMND1H3BQB6 276 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 NDUFS6O75380 124 aaKnown RBP8.6□□□□□ -1.03
SS18-205ENST00000542420 NEURL1O76050 574 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 MMP7P09237 267 aaPredicted RBP8.6□□□□□ -1.03
SS18-205ENST00000542420 FCGR2AP12318 317 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 ZNF32P17041 273 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 MPGP29372 298 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 SSTR2P30874 369 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 MEOX2P50222 304 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 FUT6P51993 359 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 IL13RA1P78552 427 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 MICBQ29980 383 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 WIPI1Q5MNZ9 446 aaPredicted RBP8.6□□□□□ -1.03
SS18-205ENST00000542420 DCAF12L2Q5VW00 463 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 RGS7BPQ6MZT1 257 aaPredicted RBP8.6□□□□□ -1.03
SS18-205ENST00000542420 C11orf87Q6NUJ2 197 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 COLCA1Q6ZS62 124 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.6□□□□□ -1.03
SS18-205ENST00000542420 LRRC18Q8N456 261 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 EMG1Q92979 244 aaKnown RBP8.6□□□□□ -1.03
SS18-205ENST00000542420 ARHGAP5-AS1Q96IT6 56 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 BCL2L14Q9BZR8 327 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 MFFQ9GZY8 342 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 ZMAT3Q9HA38 289 aaKnown RBP8.6□□□□□ -1.03
SS18-205ENST00000542420 BCO1Q9HAY6 547 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 DCAF16Q9NXF7 216 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 TNFSF18Q9UNG2 199 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 OSGIN2Q9Y236 505 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 KLF13Q9Y2Y9 288 aaPredicted RBP8.6□□□□□ -1.03
SS18-205ENST00000542420 hCG_38984A0A1B0GV85 526 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 PQLC2LA1A4F0 135 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 OR2AT4A6NND4 320 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 G3V3Y1 287 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 ARPC5O15511 151 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 SYNGR4O95473 234 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 SFT2D2O95562 160 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 ACTL6AO96019 429 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 RFPL3SP0C7P2 107 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 ZNF806P0C7X5 589 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 FAHP16930 419 aa8.6□□□□□ -1.03
SS18-205ENST00000542420 ZNF708P17019 499 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms