RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 NEURL3Q96EH8 262 aa8.37□□□□□ -1.07
CLIP1-214ENST00000540539 ELOVL5Q9NYP7 299 aa8.37□□□□□ -1.07
CLIP1-214ENST00000540539 CDV3Q9UKY7 258 aaKnown RBP8.37□□□□□ -1.07
CLIP1-214ENST00000540539 HS3ST4Q9Y661 456 aa8.37□□□□□ -1.07
CLIP1-214ENST00000540539 DOCK8Q8NF50 2099 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 A0A1B0GUS0 222 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 FRS3O43559 492 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 TBX19O60806 448 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 MMP9P14780 707 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 MAPK8P45983 427 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 ARRB1P49407 418 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-214ENST00000540539 HINT1P49773 126 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-214ENST00000540539 DUSP3P51452 185 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-214ENST00000540539 CRYBA4P53673 196 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 FXYD6P3P58550 94 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 HTD2P86397 168 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 ICAM4Q14773 271 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 FAM78AQ5JUQ0 283 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 Q6ZWC4 215 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 SYS1Q8N2H4 156 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 TMEM256Q8N2U0 113 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 TMEM156Q8N614 296 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 POC1AQ8NBT0 407 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 OR10W1Q8NGF6 305 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 SUN3Q8TAQ9 357 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 TMEM186Q96B77 213 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 RAB18Q9NP72 206 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 TMEM9BQ9NQ34 198 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 KLK13Q9UKR3 277 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 ATG2AQ2TAZ0 1938 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 TRAV26-1A0A087WT03 109 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 CDC14CA4D256 554 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 EPOPA6NHQ4 379 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 RNF212BA8MTL3 300 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 K7N7A8 449 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 NUPR1O60356 82 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 ZNF708P17019 499 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 FUT1P19526 365 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 CDKN1AP38936 164 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 BUD31P41223 144 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-214ENST00000540539 SOX2P48431 317 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 HNRNPA3P51991 378 aaKnown RBP8.36□□□□□ -1.07
CLIP1-214ENST00000540539 SCAND1P57086 179 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 ZFP36L1Q07352 338 aaKnown RBP8.36□□□□□ -1.07
CLIP1-214ENST00000540539 PRDX4Q13162 271 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 IL15RAQ13261 267 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 EXOSC7Q15024 291 aaKnown RBP8.36□□□□□ -1.07
CLIP1-214ENST00000540539 MS4A13Q5J8X5 152 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 FAM180AQ6UWF9 173 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 ZNF709Q8N972 641 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 OR6K2Q8NGY2 324 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 ZNF519Q8TB69 540 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 VN1R17PQ8TDU5 208 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 GRHL3Q8TE85 626 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 FAM3CQ92520 227 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 DIO2Q92813 273 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 GABRG3Q99928 467 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 PYGO2Q9BRQ0 406 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 OR52D1Q9H346 318 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 ZNF703Q9H7S9 590 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-214ENST00000540539 LYRM2Q9NU23 88 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-214ENST00000540539 MRPS28Q9Y2Q9 187 aaKnown RBP8.36□□□□□ -1.07
CLIP1-214ENST00000540539 NUMA1Q14980 2115 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 PLXNB3Q9ULL4 1909 aa8.36□□□□□ -1.07
CLIP1-214ENST00000540539 TRAV8-7A0A075B6U6 113 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 A0A0A6YYH2 397 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 TRAV34A0A0B4J273 112 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 A0A1W2PRS3 328 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 A6NJ64 397 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 SLC16A5O15375 505 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 MAS1P04201 325 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 GNRHRP30968 328 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 CEACAM3P40198 252 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 NANOS3P60323 173 aaKnown RBP8.35□□□□□ -1.07
CLIP1-214ENST00000540539 RNF219Q5W0B1 726 aaPredicted RBP8.35□□□□□ -1.07
CLIP1-214ENST00000540539 SPSB3Q6PJ21 355 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 Q6ZN92 141 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 TCF24Q7RTU0 167 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 FAM222BQ8WU58 562 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 C2orf50Q96LR7 162 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 SLC12A9Q9BXP2 914 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 ATG10Q9H0Y0 220 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 PSG11Q9UQ72 335 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 YIPF1Q9Y548 306 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 GREB1Q4ZG55 1949 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 DOCK4Q8N1I0 1966 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 NUP210LQ5VU65 1888 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 PPIAL4EA0A075B759 164 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 PPIAL4CA0A0B4J2A2 164 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 A0A1W2PS29 197 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 PROB1E7EW31 1015 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 PPIAL4DF5H284 164 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 HSPB1P04792 205 aaKnown RBP8.35□□□□□ -1.07
CLIP1-214ENST00000540539 PPIAL4FP0DN26 164 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 IRF1P10914 325 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 ANOS1P23352 680 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 ACTL10Q5JWF8 245 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 CST9LP1Q5W188 147 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 DPPA3Q6W0C5 159 aa8.35□□□□□ -1.07
CLIP1-214ENST00000540539 NIT1Q86X76 327 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms