RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 LNP1A1A4G5 178 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 LRRC3CA6NJW4 275 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 F12P00748 615 aaPredicted RBP14.74□□□□□ -0.05
USP28-208ENST00000540438 CSTBP04080 98 aaKnown RBP14.74□□□□□ -0.05
USP28-208ENST00000540438 ZNF84P51523 738 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 ARPC4P59998 168 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 GRB2P62993 217 aaKnown RBP14.74□□□□□ -0.05
USP28-208ENST00000540438 RSU1Q15404 277 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 PHLDA2Q53GA4 152 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 JMJD6Q6NYC1 403 aaPredicted RBP14.74□□□□□ -0.05
USP28-208ENST00000540438 ZNF529Q6P280 563 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 GGNQ86UU5 652 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 CDH26Q8IXH8 852 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 FNDC9Q8TBE3 224 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 SCARB1Q8WTV0 552 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 TMED6Q8WW62 240 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 ZNF2Q9BSG1 426 aaPredicted RBP14.74□□□□□ -0.05
USP28-208ENST00000540438 URM1Q9BTM9 101 aaKnown RBP14.74□□□□□ -0.05
USP28-208ENST00000540438 IL36RNQ9UBH0 155 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 GTF3C1Q12789 2109 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 MEX3AA1L020 520 aaKnown RBP14.74□□□□□ -0.05
USP28-208ENST00000540438 AGPAT2O15120 278 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 CER1O95813 267 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 NUP62P37198 522 aaPredicted RBP14.74□□□□□ -0.05
USP28-208ENST00000540438 B3GALT5-AS1P59052 145 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 SUPT4H1P63272 117 aaKnown RBP14.74□□□□□ -0.05
USP28-208ENST00000540438 PDZD9Q8IXQ8 264 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 UBALD2Q8IYN6 164 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 NAA11Q9BSU3 229 aaPredicted RBP14.74□□□□□ -0.05
USP28-208ENST00000540438 PAPOLGQ9BWT3 736 aaKnown RBP14.74□□□□□ -0.05
USP28-208ENST00000540438 C12orf49Q9H741 205 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 ASF1BQ9NVP2 202 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 PFDN2Q9UHV9 154 aa14.74□□□□□ -0.05
USP28-208ENST00000540438 PCNX1Q96RV3 2341 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 NBASA2RRP1 2371 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 NPIPB13A6NJU9 1138 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 NPIPB4C9JG80 1138 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 NXPH3O95157 252 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 MAGEA5P43359 124 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 CYB561P49447 251 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 SLCO5A1Q9H2Y9 848 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 ZC4H2Q9NQZ6 224 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 TAS2R3Q9NYW6 316 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 TTLL8A6PVC2 850 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 HMSDA8MTL9 139 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 MFNGO00587 321 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 CFPP27918 469 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 NPBWR2P48146 333 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 ASCL1P50553 236 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 RPS27AP62979 156 aaKnown RBP14.73□□□□□ -0.05
USP28-208ENST00000540438 CLVS2Q5SYC1 327 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 MOB3CQ70IA8 216 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 TMPRSS7Q7RTY8 843 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 FBXL14Q8N1E6 418 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 TMEM185AQ8NFB2 350 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 OR56B1Q8NGI3 324 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 UBALD1Q8TB05 177 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 MITD1Q8WV92 249 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 RTBDNQ9BSG5 229 aaPredicted RBP14.73□□□□□ -0.05
USP28-208ENST00000540438 PCSK5Q92824 1860 aa14.73□□□□□ -0.05
USP28-208ENST00000540438 IGKV1-12A0A0C4DH73 117 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 A0A1B0GV50 99 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 ZNF850A8MQ14 1090 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 IGKV1D-12P01611 117 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 TDGF1P13385 188 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 MPLP40238 635 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 HOXA4Q00056 320 aaPredicted RBP14.72□□□□□ -0.05
USP28-208ENST00000540438 DHODHQ02127 395 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 AADACL3Q5VUY0 350 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 WDR5BQ86VZ2 330 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 SEMA6DQ8NFY4 1073 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 MARS2Q96GW9 593 aaKnown RBP14.72□□□□□ -0.05
USP28-208ENST00000540438 ADH6P28332 368 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 ECH1Q13011 328 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 RAB32Q13637 225 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 C6orf15Q6UXA7 325 aaPredicted RBP14.72□□□□□ -0.05
USP28-208ENST00000540438 MYPOPQ86VE0 399 aaPredicted RBP14.72□□□□□ -0.05
USP28-208ENST00000540438 HOGA1Q86XE5 327 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 TUSC5Q8IXB3 177 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 INO80EQ8NBZ0 244 aaPredicted RBP14.72□□□□□ -0.05
USP28-208ENST00000540438 CPEB3Q8NE35 698 aaKnown RBP14.72□□□□□ -0.05
USP28-208ENST00000540438 C17orf50Q8WW18 174 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 CPNE2Q96FN4 548 aaPredicted RBP14.72□□□□□ -0.05
USP28-208ENST00000540438 FOXB1Q99853 325 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 PPA2Q9H2U2 334 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 FOXD3Q9UJU5 478 aaPredicted RBP14.72□□□□□ -0.05
USP28-208ENST00000540438 TNFSF18Q9UNG2 199 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 RELNP78509 3460 aa14.72□□□□□ -0.05
USP28-208ENST00000540438 ZNF503-AS2A6NEH8 195 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 MFSD2BA6NFX1 497 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 C9orf172C9J069 976 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 ID4P47928 161 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 SRSF3P84103 164 aaKnown RBP14.71□□□□□ -0.05
USP28-208ENST00000540438 SPATA46Q5T0L3 261 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 OR2W3Q7Z3T1 314 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 CALHM1Q8IU99 346 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 ZSCAN4Q8NAM6 433 aaPredicted RBP14.71□□□□□ -0.05
USP28-208ENST00000540438 OR5M9Q8NGP3 310 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 TMEM54Q969K7 222 aa14.71□□□□□ -0.05
USP28-208ENST00000540438 SPTSSAQ969W0 71 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms