RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 ZNF480Q8WV37 535 aa8.39□□□□□ -1.07
CTNNA1-243ENST00000540387 LINC00615Q96LM1 132 aaPredicted RBP8.39□□□□□ -1.07
CTNNA1-243ENST00000540387 MIEN1Q9BRT3 115 aa8.39□□□□□ -1.07
CTNNA1-243ENST00000540387 NIPSNAP3BQ9BS92 247 aa8.39□□□□□ -1.07
CTNNA1-243ENST00000540387 HSF4Q9ULV5 492 aa8.39□□□□□ -1.07
CTNNA1-243ENST00000540387 STRAPQ9Y3F4 350 aaKnown RBP8.39□□□□□ -1.07
CTNNA1-243ENST00000540387 A0A1B0GVT2 93 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 ATXN7O15265 892 aaPredicted RBP8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 CNOT4O95628 575 aaKnown RBP8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 TDGF1P13385 188 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 CFPP27918 469 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 CCKARP32238 428 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 MMP16P51512 607 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 UCP3P55916 312 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 DCAF7P61962 342 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 CCL20P78556 96 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 ZNF684Q5T5D7 378 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 RTL6Q6ICC9 239 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 AMZ2Q86W34 360 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 GVQW1Q8N7I0 195 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 OR2L2Q8NH16 312 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 ERGIC1Q969X5 290 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 TSACCQ96A04 125 aaPredicted RBP8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 AURKAIP1Q9NWT8 199 aaPredicted RBP8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 AHSPQ9NZD4 102 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 NAGKQ9UJ70 344 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 VPS13AQ96RL7 3174 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 DMDP11532 3685 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 TRBV24-1A0A075B6N3 115 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 LOC105371242A0A075B767 164 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 A6NIZ1 184 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 AQP7O14520 342 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 LAMTOR5O43504 91 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 HIST1H1CP16403 213 aaKnown RBP8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 OR10J1P30954 320 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 HRH1P35367 487 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 BSGP35613 385 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 APOBEC1P41238 236 aaKnown RBP8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 NCBP2P52298 156 aaKnown RBP eCLIP8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 ZNF136P52737 540 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 FOXF1Q12946 379 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 MLC1Q15049 377 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 ANKRD55Q3KP44 614 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 TMEM128Q5BJH2 165 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 C1orf189Q5VU69 101 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 METRNLQ641Q3 311 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 NXPE4Q6UWF7 544 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 CLEC18BQ6UXF7 455 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 ZNF550Q7Z398 422 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 C1orf210Q8IVY1 113 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 SLC22A18ASQ8N1D0 253 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 METTL27Q8N6F8 245 aaPredicted RBP8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 CYB561D1Q8N8Q1 229 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 CADM4Q8NFZ8 388 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 OR52E1Q8NGJ3 308 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 OR6K6Q8NGW6 343 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 FAM213BQ8TBF2 198 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 OR1E3Q8WZA6 343 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 CMBLQ96DG6 245 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 OR7D2Q96RA2 312 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 TNFRSF13CQ96RJ3 184 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 NMNAT2Q9BZQ4 307 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 SH3BGRL3Q9H299 93 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 OSGIN2Q9Y236 505 aa8.38□□□□□ -1.07
CTNNA1-243ENST00000540387 PRSS38A1L453 326 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 A8MVM7 634 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 PPP5D1E7EU14 171 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 TMPRSS11DO60235 418 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 UPK3AO75631 287 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 SFT2D2O95562 160 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 AK4P27144 223 aaPredicted RBP8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 PDLIM4P50479 330 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 RND3P61587 244 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 ZNF542PQ5EBM4 170 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 COX18Q8N8Q8 333 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 MFSD9Q8NBP5 474 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 OR14L1PQ8NHC6 308 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 TMEM230Q96A57 120 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 DNAJA3Q96EY1 480 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 VPS25Q9BRG1 176 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 ULBP3Q9BZM4 244 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 CSTL1Q9H114 145 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 RNF150Q9ULK6 438 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 GPR89AB7ZAQ6 455 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 CLDN34H7C241 214 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 ZNF264O43296 627 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 OR2J2O76002 312 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 NDUFB8O95169 186 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 OPN1LWP04000 364 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 CHRM2P08172 466 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 GPR89BP0CG08 455 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 CEACAM1P13688 526 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 CD27P26842 260 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 YPEL5P62699 121 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 VAMP2P63027 116 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 FAM166AQ6J272 317 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 TRAPPC6BQ86SZ2 158 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 AGBL5Q8NDL9 886 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 MS4A6EQ96DS6 147 aa8.37□□□□□ -1.07
CTNNA1-243ENST00000540387 SCARF2Q96GP6 870 aaPredicted RBP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms