RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SLC22A1O15245 554 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 SYT7O43581 403 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 NRASP01111 189 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 RPS2P15880 293 aaKnown RBP12.58□□□□□ -0.4
CPSF1-208ENST00000532560 GPM6AP51674 278 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 CCR9P51686 369 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 SEC61A1P61619 476 aaKnown RBP12.58□□□□□ -0.4
CPSF1-208ENST00000532560 GNG3P63215 75 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 KRTAP21-3Q3LHN1 58 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 ESCO2Q56NI9 601 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 CEP78Q5JTW2 689 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 CLVS2Q5SYC1 327 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 TEX36Q5VZQ5 186 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 PLCXD3Q63HM9 321 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 NLRC3Q7RTR2 1065 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 LHFPL3Q86UP9 236 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 OR5A2Q8NGI9 324 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 OR10Z1Q8NGY1 313 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 LRRC29Q8WV35 223 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 PELI1Q96FA3 418 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 RNF170Q96K19 258 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 FGF20Q9NP95 211 aaPredicted RBP12.58□□□□□ -0.4
CPSF1-208ENST00000532560 PLCXD1Q9NUJ7 323 aa12.58□□□□□ -0.4
CPSF1-208ENST00000532560 TRAV38-1A0A0B4J264 116 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 A0A0G2JMP0 313 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 A0A0X1KG70 313 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 OOEPA6NGQ2 149 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 KIAA1324LA8MWY0 1029 aaPredicted RBP12.57□□□□□ -0.4
CPSF1-208ENST00000532560 J3QLW9 94 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 CDIPTO14735 213 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 ISG15P05161 165 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 HTR1AP08908 422 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 WNT2P09544 360 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 FAM157CP0CG43 387 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 ZNF12P17014 697 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 ZNF19P17023 458 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 EGR1P18146 543 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 GATA3P23771 443 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 ZFP36P26651 326 aaKnown RBP12.57□□□□□ -0.4
CPSF1-208ENST00000532560 CD80P33681 288 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 NANOS3P60323 173 aaKnown RBP12.57□□□□□ -0.4
CPSF1-208ENST00000532560 SLC35A2P78381 396 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 LCN2P80188 198 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 HOXA4Q00056 320 aaPredicted RBP12.57□□□□□ -0.4
CPSF1-208ENST00000532560 MRPL28Q13084 256 aaKnown RBP12.57□□□□□ -0.4
CPSF1-208ENST00000532560 ODF4Q2M2E3 257 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 PRSS48Q7RTY5 328 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 SCCPDHQ8NBX0 429 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 OR4M2Q8NGB6 313 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 OR8B3Q8NGG8 313 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 TBC1D15Q8TC07 691 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 NEIL1Q96FI4 390 aaPredicted RBP12.57□□□□□ -0.4
CPSF1-208ENST00000532560 OR8B2Q96RD0 313 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 METTL17Q9H7H0 456 aaPredicted RBP12.57□□□□□ -0.4
CPSF1-208ENST00000532560 PLEKHA1Q9HB21 404 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 FRRS1LQ9P0K9 344 aa12.57□□□□□ -0.4
CPSF1-208ENST00000532560 SRRM5B3KS81 715 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 ZNF732B4DXR9 585 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 C3orf80F5H4A9 247 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 J3QLI3 93 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 RGS10O43665 173 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 NDUFA2O43678 99 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 GABARAPO95166 117 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 LIMS3P0CW19 117 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 LIMS4P0CW20 117 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 MUC1P15941 1255 aaPredicted RBP12.56□□□□□ -0.4
CPSF1-208ENST00000532560 SRD5A1P18405 259 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 SERPINB10P48595 397 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 PITPNBP48739 271 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 ALKBH1Q13686 389 aaKnown RBP12.56□□□□□ -0.4
CPSF1-208ENST00000532560 SYT6Q5T7P8 510 aaPredicted RBP12.56□□□□□ -0.4
CPSF1-208ENST00000532560 TMEM244Q5VVB8 128 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 SFRP4Q6FHJ7 346 aaPredicted RBP12.56□□□□□ -0.4
CPSF1-208ENST00000532560 LAIR2Q6ISS4 152 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 IL17RELQ6ZVW7 336 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 MOB3CQ70IA8 216 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 FAM90A1Q86YD7 464 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 BOLLQ8N9W6 283 aaKnown RBP12.56□□□□□ -0.4
CPSF1-208ENST00000532560 C19orf18Q8NEA5 215 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 BPIFB6Q8NFQ5 453 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 HAVCR2Q8TDQ0 301 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 RPL3LQ92901 407 aaKnown RBP12.56□□□□□ -0.4
CPSF1-208ENST00000532560 C10orf35Q96D05 121 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 DCUN1D5Q9BTE7 237 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 SSBP3Q9BWW4 388 aaPredicted RBP12.56□□□□□ -0.4
CPSF1-208ENST00000532560 CHST5Q9GZS9 411 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 OR51I2Q9H344 312 aa12.56□□□□□ -0.4
CPSF1-208ENST00000532560 ISG20L2Q9H9L3 353 aaKnown RBP12.56□□□□□ -0.4
CPSF1-208ENST00000532560 DIMT1Q9UNQ2 313 aaKnown RBP12.56□□□□□ -0.4
CPSF1-208ENST00000532560 ANKRD61A6NGH8 418 aa12.55□□□□□ -0.4
CPSF1-208ENST00000532560 OR4C45A6NMZ5 311 aa12.55□□□□□ -0.4
CPSF1-208ENST00000532560 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.55□□□□□ -0.4
CPSF1-208ENST00000532560 TNFRSF13BO14836 293 aaPredicted RBP12.55□□□□□ -0.4
CPSF1-208ENST00000532560 CLPXO76031 633 aa12.55□□□□□ -0.4
CPSF1-208ENST00000532560 PIPP12273 146 aaPredicted RBP12.55□□□□□ -0.4
CPSF1-208ENST00000532560 DCAF12L2Q5VW00 463 aa12.55□□□□□ -0.4
CPSF1-208ENST00000532560 RDH10Q8IZV5 341 aa12.55□□□□□ -0.4
CPSF1-208ENST00000532560 TEX29Q8N6K0 151 aa12.55□□□□□ -0.4
CPSF1-208ENST00000532560 DEFB108BQ8NET1 73 aa12.55□□□□□ -0.4
CPSF1-208ENST00000532560 S100ZQ8WXG8 99 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 96.6 ms