RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 IKZF2Q9UKS7 526 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 GTF2A1LQ9UNN4 478 aa12.09□□□□□ -0.47
VPS28-215ENST00000531924 SF3B6Q9Y3B4 125 aaKnown RBP12.09□□□□□ -0.47
VPS28-215ENST00000531924 TRBV23-1A0A0A0MS06 115 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 A0A0U1RQV5 110 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 A0A1W2PPH5 198 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 OR5B21A6NL26 309 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 GYG2O15488 501 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 ANGPTL7O43827 346 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 ZNF254O75437 659 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 MTRF1O75570 445 aaKnown RBP12.08□□□□□ -0.48
VPS28-215ENST00000531924 CLPXO76031 633 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 DLX1P56177 255 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 CBX1P83916 185 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 ACSM1Q08AH1 577 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 FLOT2Q14254 428 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 ZNF684Q5T5D7 378 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 HAGHLQ6PII5 290 aaPredicted RBP12.08□□□□□ -0.48
VPS28-215ENST00000531924 Q6ZSV7 163 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 PNKDQ8N490 385 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 Q8N7P7 452 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 OR5A2Q8NGI9 324 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 OR51E1Q8TCB6 317 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 ASB17Q8WXJ9 295 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 RBM4BQ9BQ04 359 aaKnown RBP12.08□□□□□ -0.48
VPS28-215ENST00000531924 PRRG3Q9BZD7 231 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 PBOV1Q9GZY1 135 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 PPA2Q9H2U2 334 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 OR51I2Q9H344 312 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 GPR84Q9NQS5 396 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 PAPOLBQ9NRJ5 636 aaKnown RBP12.08□□□□□ -0.48
VPS28-215ENST00000531924 RASL12Q9NYN1 266 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 ENPP5Q9UJA9 477 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 PIGLQ9Y2B2 252 aa12.08□□□□□ -0.48
VPS28-215ENST00000531924 hCG_1809904A0A1W2PP81 198 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 A0A1W2PPE2 198 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 A0A1W2PR64 198 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 A0A1W2PRV1 198 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 RHBDL1O75783 438 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 PSG2P11465 335 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 DCTDP32321 178 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 RIDAP52758 137 aaKnown RBP12.07□□□□□ -0.48
VPS28-215ENST00000531924 PROK1P58294 105 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 ACTR3P61158 418 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 ESRRGP62508 458 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 SMIM21Q3B7S5 101 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 DNAL1Q4LDG9 190 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 ASPHD2Q6ICH7 369 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 ZNF679Q8IYX0 411 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 ZNRF1Q8ND25 227 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 OR51G2Q8NGK0 314 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 DNAJC9Q8WXX5 260 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 CNN2Q99439 309 aaKnown RBP12.07□□□□□ -0.48
VPS28-215ENST00000531924 TEAD3Q99594 435 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 FGF23Q9GZV9 251 aaPredicted RBP12.07□□□□□ -0.48
VPS28-215ENST00000531924 C16orf95Q9H693 158 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 ELL3Q9HB65 397 aaPredicted RBP12.07□□□□□ -0.48
VPS28-215ENST00000531924 SLC25A19Q9HC21 320 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 FAM206AQ9NX38 181 aa12.07□□□□□ -0.48
VPS28-215ENST00000531924 H2AFY2Q9P0M6 372 aaPredicted RBP12.07□□□□□ -0.48
VPS28-215ENST00000531924 IGKV1D-17A0A075B6S4 117 aa12.06□□□□□ -0.48
VPS28-215ENST00000531924 SLC22A31A6NKX4 558 aa12.06□□□□□ -0.48
VPS28-215ENST00000531924 SLC1A7O00341 560 aa12.06□□□□□ -0.48
VPS28-215ENST00000531924 FKBP6O75344 327 aa12.06□□□□□ -0.48
VPS28-215ENST00000531924 NRASP01111 189 aa12.06□□□□□ -0.48
VPS28-215ENST00000531924 FAHP16930 419 aa12.06□□□□□ -0.48
VPS28-215ENST00000531924 SLC2A5P22732 501 aa12.06□□□□□ -0.48
VPS28-215ENST00000531924 CRISP1P54107 249 aa12.06□□□□□ -0.48
VPS28-215ENST00000531924 KRTAP10-3P60369 221 aa12.06□□□□□ -0.48
VPS28-215ENST00000531924 DMRTC1Q5HYR2 192 aa12.06□□□□□ -0.48
VPS28-215ENST00000531924 ZBTB37Q5TC79 503 aa12.06□□□□□ -0.48
VPS28-215ENST00000531924 TRPM8Q7Z2W7 1104 aa12.06□□□□□ -0.48
VPS28-215ENST00000531924 AQP3Q92482 292 aa12.06□□□□□ -0.48
VPS28-215ENST00000531924 TNFRSF14Q92956 283 aa12.06□□□□□ -0.48
VPS28-215ENST00000531924 TTTY10Q9BZA0 68 aa12.06□□□□□ -0.48
VPS28-215ENST00000531924 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.06□□□□□ -0.483e-6■□□□□ 9.1
VPS28-215ENST00000531924 LOC110117498-PIK3R3F6TDL0 507 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 H3BUX3 64 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 TSPAN9O75954 239 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 GABRA5P31644 462 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 LGALS4P56470 323 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 RPL31P62899 125 aaKnown RBP12.05□□□□□ -0.48
VPS28-215ENST00000531924 ROM1Q03395 351 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 EGR3Q06889 387 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 C2orf68Q2NKX9 166 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 BCL2L15Q5TBC7 163 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 ZNF573Q86YE8 665 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 BEND2Q8NDZ0 799 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 FAM110DQ8TAY7 271 aaPredicted RBP12.05□□□□□ -0.48
VPS28-215ENST00000531924 NRBF2Q96F24 287 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 SDSLQ96GA7 329 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 OR8B4Q96RC9 309 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 SSX3Q99909 188 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 HEXA-AS1Q9H8Q6 139 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 POLDIP2Q9Y2S7 368 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 MAB21L2Q9Y586 359 aa12.05□□□□□ -0.48
VPS28-215ENST00000531924 VWFP04275 2813 aa12.04□□□□□ -0.48
VPS28-215ENST00000531924 RFPL4AA6NLU0 287 aa12.04□□□□□ -0.48
VPS28-215ENST00000531924 RFPL4AL1F8VTS6 287 aa12.04□□□□□ -0.48
VPS28-215ENST00000531924 DHRS3O75911 302 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms