RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 TBL1YQ9BQ87 522 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 ACBD6Q9BR61 282 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 PORCNQ9H237 461 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 SLC38A1Q9H2H9 487 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 GOLPH3Q9H4A6 298 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 EXOSC4Q9NPD3 245 aaKnown RBP4.49□□□□□ -1.69
NUP54-215ENST00000514313 SIRT7Q9NRC8 400 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 PCM1Q15154 2024 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 TMEM94Q12767 1356 aa4.49□□□□□ -1.69
NUP54-215ENST00000514313 PTPRTO14522 1441 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 IGKV6-21A0A0C4DH24 114 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 hCG_2039718K7EN88 272 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 GATBO75879 557 aaKnown RBP4.48□□□□□ -1.69
NUP54-215ENST00000514313 ERFP50548 548 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 VSNL1P62760 191 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 LAMTOR4Q0VGL1 99 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 YIF1BQ5BJH7 314 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 AP1ARQ63HQ0 302 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 FAM71E1Q6IPT2 247 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 NELFCDQ8IXH7 590 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 OR5T1Q8NG75 326 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 SFXN5Q8TD22 340 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 ESR2Q92731 530 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 CPNE4Q96A23 557 aaPredicted RBP4.48□□□□□ -1.69
NUP54-215ENST00000514313 SNF8Q96H20 258 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 RNF5Q99942 180 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 PRORYQ9H606 182 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 CYB5R1Q9UHQ9 305 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 RFNGQ9Y644 331 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 DOCK9Q9BZ29 2069 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 PIK3R4Q99570 1358 aa4.48□□□□□ -1.69
NUP54-215ENST00000514313 IGHV3-49A0A0A0MS15 119 aa4.47□□□□□ -1.69
NUP54-215ENST00000514313 NDUFS5O43920 106 aa4.47□□□□□ -1.69
NUP54-215ENST00000514313 PLIN3O60664 434 aa4.47□□□□□ -1.69
NUP54-215ENST00000514313 CD8AP01732 235 aa4.47□□□□□ -1.69
NUP54-215ENST00000514313 CD74P04233 296 aa4.47□□□□□ -1.69
NUP54-215ENST00000514313 SPAM1P38567 509 aa4.47□□□□□ -1.69
NUP54-215ENST00000514313 CDC20Q12834 499 aa4.47□□□□□ -1.69
NUP54-215ENST00000514313 STX4Q12846 297 aa4.47□□□□□ -1.69
NUP54-215ENST00000514313 USF2Q15853 346 aaPredicted RBP4.47□□□□□ -1.69
NUP54-215ENST00000514313 SYT6Q5T7P8 510 aaPredicted RBP4.47□□□□□ -1.69
NUP54-215ENST00000514313 ERO1BQ86YB8 467 aa4.47□□□□□ -1.69
NUP54-215ENST00000514313 OR4M2Q8NGB6 313 aa4.47□□□□□ -1.69
NUP54-215ENST00000514313 SLC25A46Q96AG3 418 aa4.47□□□□□ -1.69
NUP54-215ENST00000514313 TMED9Q9BVK6 235 aa4.47□□□□□ -1.69
NUP54-215ENST00000514313 OPN4Q9UHM6 478 aa4.47□□□□□ -1.69
NUP54-215ENST00000514313 ZNF324O75467 553 aaPredicted RBP4.46□□□□□ -1.7
NUP54-215ENST00000514313 NQO2P16083 231 aa4.46□□□□□ -1.7
NUP54-215ENST00000514313 IL3RAP26951 378 aa4.46□□□□□ -1.7
NUP54-215ENST00000514313 PRSS3P35030 304 aa4.46□□□□□ -1.7
NUP54-215ENST00000514313 TOMM34Q15785 309 aaPredicted RBP4.46□□□□□ -1.7
NUP54-215ENST00000514313 ABCA11PQ4W5N1 156 aa4.46□□□□□ -1.7
NUP54-215ENST00000514313 SSX6Q7RTT6 188 aa4.46□□□□□ -1.7
NUP54-215ENST00000514313 GAPTQ8N292 157 aa4.46□□□□□ -1.7
NUP54-215ENST00000514313 OR13G1Q8NGZ3 307 aa4.46□□□□□ -1.7
NUP54-215ENST00000514313 ZNF461Q8TAF7 563 aa4.46□□□□□ -1.7
NUP54-215ENST00000514313 C17orf50Q8WW18 174 aa4.46□□□□□ -1.7
NUP54-215ENST00000514313 TIMM29Q9BSF4 260 aa4.46□□□□□ -1.7
NUP54-215ENST00000514313 CHCHD7Q9BUK0 85 aa4.46□□□□□ -1.7
NUP54-215ENST00000514313 OR2S2Q9NQN1 319 aa4.46□□□□□ -1.7
NUP54-215ENST00000514313 ENOPH1Q9UHY7 261 aa4.46□□□□□ -1.7
NUP54-215ENST00000514313 ENPP4Q9Y6X5 453 aa4.46□□□□□ -1.7
NUP54-215ENST00000514313 IGKV2D-24A0A075B6R9 120 aa4.45□□□□□ -1.7
NUP54-215ENST00000514313 POLR3GO15318 223 aaPredicted RBP4.45□□□□□ -1.7
NUP54-215ENST00000514313 PSMB2P49721 201 aa4.45□□□□□ -1.7
NUP54-215ENST00000514313 ADIGQ0VDE8 80 aa4.45□□□□□ -1.7
NUP54-215ENST00000514313 PMVKQ15126 192 aa4.45□□□□□ -1.7
NUP54-215ENST00000514313 ANGPT1Q15389 498 aa4.45□□□□□ -1.7
NUP54-215ENST00000514313 STARD4Q96DR4 205 aa4.45□□□□□ -1.7
NUP54-215ENST00000514313 CTRCQ99895 268 aa4.45□□□□□ -1.7
NUP54-215ENST00000514313 SHCBP1LQ9BZQ2 653 aa4.45□□□□□ -1.7
NUP54-215ENST00000514313 FBXO6Q9NRD1 293 aaPredicted RBP4.45□□□□□ -1.7
NUP54-215ENST00000514313 C21orf62Q9NYP8 219 aa4.45□□□□□ -1.7
NUP54-215ENST00000514313 MAT2BQ9NZL9 334 aa4.45□□□□□ -1.7
NUP54-215ENST00000514313 ANXA10Q9UJ72 324 aa4.45□□□□□ -1.7
NUP54-215ENST00000514313 ENPP5Q9UJA9 477 aa4.45□□□□□ -1.7
NUP54-215ENST00000514313 CENPVL3A0A0U1RRI6 287 aa4.44□□□□□ -1.7
NUP54-215ENST00000514313 ERICH2A1L162 156 aa4.44□□□□□ -1.7
NUP54-215ENST00000514313 MUC1P15941 1255 aaPredicted RBP4.44□□□□□ -1.7
NUP54-215ENST00000514313 NPY1RP25929 384 aa4.44□□□□□ -1.7
NUP54-215ENST00000514313 DSTNP60981 165 aa4.44□□□□□ -1.7
NUP54-215ENST00000514313 PPP1CAP62136 330 aa4.44□□□□□ -1.7
NUP54-215ENST00000514313 GRB2P62993 217 aaKnown RBP4.44□□□□□ -1.7
NUP54-215ENST00000514313 DMC1Q14565 340 aa4.44□□□□□ -1.7
NUP54-215ENST00000514313 SHHQ15465 462 aa4.44□□□□□ -1.7
NUP54-215ENST00000514313 NECAP1Q8NC96 275 aa4.44□□□□□ -1.7
NUP54-215ENST00000514313 VAT1Q99536 393 aa4.44□□□□□ -1.7
NUP54-215ENST00000514313 WDR55Q9H6Y2 383 aaPredicted RBP4.44□□□□□ -1.7
NUP54-215ENST00000514313 C12orf4Q9NQ89 552 aa4.44□□□□□ -1.7
NUP54-215ENST00000514313 NRBP2Q9NSY0 501 aa4.44□□□□□ -1.7
NUP54-215ENST00000514313 ANKRD12Q6UB98 2062 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 MYO10Q9HD67 2058 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 F8VP50 259 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 MAGEB4O15481 346 aaPredicted RBP4.43□□□□□ -1.7
NUP54-215ENST00000514313 DHRS3O75911 302 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 FADS2O95864 444 aaKnown RBP4.43□□□□□ -1.7
NUP54-215ENST00000514313 GIMD1P0DJR0 217 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 IL1RNP18510 177 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 CMC4P56277 68 aaPredicted RBP4.43□□□□□ -1.7
NUP54-215ENST00000514313 KRTAP12-2P59991 146 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms