RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 PIPOXQ9P0Z9 390 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 COLQQ9Y215 455 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 PQLC2LA1A4F0 135 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 MBLAC1A4D2B0 266 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 CXorf65A6NEN9 183 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 FAM74A7A6NL05 159 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 C4orf47A7E2U8 309 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 H0YGG7 62 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 EIF3GO75821 320 aaKnown RBP eCLIP7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 C1QAP02745 245 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 F11P03951 625 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 CD14P08571 375 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 OR5AC1P0C628 307 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 HTR5AP47898 357 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 TMEM176BQ3YBM2 270 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 NPSR1Q6W5P4 371 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 PIGTQ969N2 578 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 OPALINQ96PE5 141 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 MARVELD1Q9BSK0 173 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 ADGRL4Q9HBW9 690 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 A4GALTQ9NPC4 353 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 TNFSF15O95150 251 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 LIMS3P0CW19 117 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 LIMS4P0CW20 117 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 BTF3P20290 206 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 CD96P40200 585 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 CTBSQ01459 385 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 MFAP5Q13361 173 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 PMCHL1Q16048 86 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 EXT1Q16394 746 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 CTF1Q16619 201 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 DRAM2Q6UX65 266 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 MMP21Q8N119 569 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 ISG20Q96AZ6 181 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 NTNG2Q96CW9 530 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 RASL12Q9NYN1 266 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 OR2W5A6NFC9 320 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 RBFOX3A6NFN3 312 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 SERINC4A6NH21 518 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 PYCARD-AS1I3L0S3 204 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 HSD17B6O14756 317 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 TSPAN13O95857 204 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 KLRB1Q12918 225 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 GPNMBQ14956 572 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 TMEM128Q5BJH2 165 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 SEZ6L2Q6UXD5 910 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 TMEM116Q8NCL8 245 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 PFN4Q8NHR9 129 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 MARCH1Q8TCQ1 289 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 RAB37Q96AX2 223 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 MOGAT1Q96PD6 335 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 MS4A8Q9BY19 250 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 KCNK15Q9H427 330 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 PLAC1Q9HBJ0 212 aa7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 PEF1Q9UBV8 284 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-218ENST00000513024 DNAJC25-GNG10A0A024R161 153 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 FXYD1O00168 92 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 MFNGO00587 321 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 IL2RAP01589 272 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 SOD3P08294 240 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 POU2F2P09086 479 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 UQCRFS1P47985 274 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 NUBP1P53384 320 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 DHODHQ02127 395 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 DPY19L2P2Q6ZN68 376 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 ZNF687Q8N1G0 1237 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 NUP37Q8NFH4 326 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 ALKBH7Q9BT30 221 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 RAB33BQ9H082 229 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 ZNF275Q9NSD4 429 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 PSENENQ9NZ42 101 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 PRAMEF25A6NGN4 478 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 GSTP1P09211 210 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 DLX1P56177 255 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 BPIFB3P59826 476 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 RAB32Q13637 225 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 FZD2Q14332 565 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 SURF2Q15527 256 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 ST3GAL2Q16842 350 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 SPATA45Q537H7 98 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 PRAMEF5Q5TYX0 476 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 PRAMEF6Q5VXH4 476 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 UBTD2Q8WUN7 234 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 AUNIPQ9H7T9 357 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 SRD5A3Q9H8P0 318 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 TBX21Q9UL17 535 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 SLC5A10A0PJK1 596 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 PMS2P1A4D2B8 440 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 ARPC3O15145 178 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 HRO43593 1189 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 NDUFB7P17568 137 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 CEBPDP49716 269 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 PFN3P60673 137 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 DEFB109BQ30KR1 87 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 OVCH2Q7RTZ1 564 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 GPR32P1Q8NGA4 272 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 EID2BQ96D98 161 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 TCTN2Q96GX1 697 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 ANGPTL4Q9BY76 406 aa7.87□□□□□ -1.15
LIMCH1-218ENST00000513024 EGLN1Q9GZT9 426 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms