RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 OTX2P32243 289 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 EIF1P41567 113 aaKnown RBP14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 FHITP49789 147 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 PPT1P50897 306 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 SSR4P51571 173 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 ZNF529Q6P280 563 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 PLXDC2Q6UX71 529 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 SLC16A13Q7RTY0 426 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 CCDC36Q8IYA8 594 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 OR5H2Q8NGV7 314 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 TERB2Q8NHR7 220 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 REEP6Q96HR9 211 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 ZNF175Q9Y473 711 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 RFNGQ9Y644 331 aa14.48□□□□□ -0.09
CCDC88B-210ENST00000494566 NSG1A0A0A6YYJ2 146 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 CCDC163A0A0D9SF12 145 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 C1QL1O75973 258 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 DUS4LO95620 317 aaKnown RBP14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 ONECUT2O95948 504 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 NOVA1P51513 510 aaKnown RBP14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 RIPPLY1Q0D2K3 151 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 IL11RAQ14626 422 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 RPS19BP1Q86WX3 136 aaKnown RBP14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 OR13G1Q8NGZ3 307 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 SLC25A43Q8WUT9 341 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 PTX4Q96A99 478 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 AKR1E2Q96JD6 320 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 UQCC2Q9BRT2 126 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 SLCO5A1Q9H2Y9 848 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 RHOFQ9HBH0 211 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 CFAP47Q6ZTR5 3102 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 LOC102723996A0A087X1L8 192 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 C9J4A7 227 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 STMND1H3BQB6 276 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 ANGPTL7O43827 346 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 RD3LP0DJH9 198 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 ITGA3P26006 1051 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 BLVRBP30043 206 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 OPRM1P35372 400 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 SNU13P55769 128 aaKnown RBP14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 SUPT4H1P63272 117 aaKnown RBP14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 OPN5Q6U736 354 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 ADPRHL1Q8NDY3 354 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 OR2AE1Q8NHA4 323 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 BSCL2Q96G97 398 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 UQCC1Q9NVA1 299 aa14.47□□□□□ -0.09
CCDC88B-210ENST00000494566 A0A0A6YYH2 397 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 A6NJ64 397 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 XRCC2O43543 280 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 CD63P08962 238 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 ADH6P28332 368 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 NTF4P34130 210 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 GUCA1AP43080 201 aaPredicted RBP14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 CEBPGP53567 150 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 FXYD4P59646 89 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 H3F3AP84243 136 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 ENDOGQ14249 297 aaKnown RBP14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 ZNF345Q14585 488 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 RBMS3Q6XE24 437 aaKnown RBP14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 C6orf201Q7Z4U5 140 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 C5orf24Q7Z6I8 188 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 SPAG16Q8N0X2 631 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 WDR54Q9H977 334 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 ZFHX4Q86UP3 3567 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 NME2P1O60361 137 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 SNRPEP62304 92 aaKnown RBP14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 FLI1Q01543 452 aaPredicted RBP14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 RSPO1Q2MKA7 263 aaPredicted RBP14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 OR14K1Q8NGZ2 314 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 STOML3Q8TAV4 291 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 PLEK2Q9NYT0 353 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 FLVCR1Q9Y5Y0 555 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 BDP1A6H8Y1 2624 aa14.46□□□□□ -0.09
CCDC88B-210ENST00000494566 DOCK10Q96BY6 2186 aa14.46□□□□□ -0.1
CCDC88B-210ENST00000494566 TLX3O43711 291 aaPredicted RBP14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 DIRAS3O95661 229 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 MSR1P21757 451 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 MST1LQ2TV78 715 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 OR9K2Q8NGE7 335 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 RNF141Q8WVD5 230 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 SECTM1Q8WVN6 248 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 USB1Q9BQ65 265 aaKnown RBP14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 RSRP1Q9BUV0 290 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 ZNF700Q9H0M5 742 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 TMEM265A0A087WTH1 108 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 NDUFA2O43678 99 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 SFTA3P0C7M3 94 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 OR8U9P0C7N5 309 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 RFPL3SP0C7P2 107 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 RAB13P51153 203 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 UBE2V2Q15819 145 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 SNAI3Q3KNW1 292 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 FREM1Q5H8C1 2179 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 HOGA1Q86XE5 327 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 OR8U1Q8NH10 309 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 NABP1Q96AH0 204 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 GPHA2Q96T91 129 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 ANGPTL4Q9BY76 406 aa14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 RCL1Q9Y2P8 373 aaKnown RBP14.45□□□□□ -0.1
CCDC88B-210ENST00000494566 AMDHD2Q9Y303 409 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms