RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 KLHDC2Q9Y2U9 406 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 RER1O15258 196 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 XRCC3O43542 346 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 GLSO94925 669 aaPredicted RBP9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OR2A4O95047 310 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 CYB561P49447 251 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 DAP3P51398 398 aaKnown RBP9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 CSNK2A1P68400 391 aaPredicted RBP9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 NSUN5P2Q63ZY6 315 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 STAC2Q6ZMT1 411 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 MOB3CQ70IA8 216 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 LYG2Q86SG7 212 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 FAM185AQ8N0U4 392 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 CSNK2A3Q8NEV1 391 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 LRFN5Q96NI6 719 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OR2A7Q96R45 310 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 ABHD6Q9BV23 337 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 CHST6Q9GZX3 395 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 P4HTMQ9NXG6 502 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 TAS2R4Q9NYW5 299 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OR5V1Q9UGF6 321 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 A0A1W2PR80 420 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 BLACEA4D250 179 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 K7ESF4 209 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 M0R143 59 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 GPR37O15354 613 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SOX15O60248 233 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 WISP1O95388 367 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 GUSBP08236 651 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 MUC1P15941 1255 aaPredicted RBP9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 FZD5Q13467 585 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 RPUSD3Q6P087 351 aaKnown RBP9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 KDF1Q8NAX2 398 aaPredicted RBP9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 HIST1H2BAQ96A08 127 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 GOLT1BQ9Y3E0 138 aa9.56□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OTOGLQ3ZCN5 2332 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 M0R296 226 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 TNFSF12O43508 249 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 JTBO76095 146 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 BTCP35070 178 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SULT1A1P50225 295 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 PDCD1Q15116 288 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SURF2Q15527 256 aaPredicted RBP9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OR8G1Q15617 311 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 ZNF141Q15928 474 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 C6orf15Q6UXA7 325 aaPredicted RBP9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 NPEPL1Q8NDH3 523 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 MITD1Q8WV92 249 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 NUDCD2Q8WVJ2 157 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 ST6GALNAC5Q9BVH7 336 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 MFRPQ9BY79 579 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 PIPOXQ9P0Z9 390 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 HHLA2Q9UM44 414 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 EXOGQ9Y2C4 368 aaKnown RBP9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 DOCK10Q96BY6 2186 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 LOC100289279A0A1B0GTE1 492 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 ALG1L2C9J202 215 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 HTR2CP28335 458 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 NPY4RP50391 375 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 RASGEF1BQ0VAM2 473 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 MIDNQ504T8 468 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 ATG4DQ86TL0 474 aaPredicted RBP9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SGPP2Q8IWX5 399 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 OR4K15Q8NH41 348 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 DCBLD2Q96PD2 775 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SOSTQ9BQB4 213 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 TWSG1Q9GZX9 223 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 LPAR3Q9UBY5 353 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 RHBDD3Q9Y3P4 386 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 FREM2Q5SZK8 3169 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 FAM157BP0CG42 384 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 NDUFB7P17568 137 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 GABRR1P24046 479 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 CARD18P57730 90 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SPCS3P61009 180 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SLC25A30Q5SVS4 291 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 CD300LDQ6UXZ3 194 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 DND1Q8IYX4 353 aaKnown RBP9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 DNASE2BQ8WZ79 361 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 TOMM40LQ969M1 308 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 CMTM3Q96MX0 182 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 PARPBPQ9NWS1 579 aa9.55□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 TAAR5O14804 337 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 KCNAB3O43448 404 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 EIF4E2O60573 245 aaKnown RBP9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 CCL2P13500 99 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 B4GALT1P15291 398 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 FCGR2CP31995 323 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 ACSM1Q08AH1 577 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 RGP1Q92546 391 aaPredicted RBP9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 PILRBQ9UKJ0 227 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 TNFSF18Q9UNG2 199 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 AMDHD2Q9Y303 409 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 SHANK1Q9Y566 2161 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 DSPPQ9NZW4 1301 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 PI3P19957 117 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 ZXDAP98168 799 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 FAM189A2Q15884 450 aa9.54□□□□□ -0.88
MSH5-SAPCD1-207ENST00000493662 HAGHQ16775 308 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms