RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 ZDHHC22Q8N966 263 aa20.43■□□□□ 0.86
UPF3A-209ENST00000492270 AQP3Q92482 292 aa20.43■□□□□ 0.86
UPF3A-209ENST00000492270 PCGF1Q9BSM1 259 aa20.43■□□□□ 0.86
UPF3A-209ENST00000492270 PLATP00750 562 aa20.42■□□□□ 0.86
UPF3A-209ENST00000492270 GLRA1P23415 457 aa20.42■□□□□ 0.86
UPF3A-209ENST00000492270 SLC36A1Q7Z2H8 476 aa20.42■□□□□ 0.86
UPF3A-209ENST00000492270 FAM220AQ7Z4H9 259 aa20.42■□□□□ 0.86
UPF3A-209ENST00000492270 LGALS12Q96DT0 336 aa20.42■□□□□ 0.86
UPF3A-209ENST00000492270 GAFA1Q96PS6 74 aa20.42■□□□□ 0.86
UPF3A-209ENST00000492270 JMJD8Q96S16 334 aa20.42■□□□□ 0.86
UPF3A-209ENST00000492270 MS4A7Q9GZW8 240 aaPredicted RBP20.42■□□□□ 0.86
UPF3A-209ENST00000492270 NLKQ9UBE8 527 aa20.42■□□□□ 0.86
UPF3A-209ENST00000492270 ANK2Q01484 3957 aa20.42■□□□□ 0.86
UPF3A-209ENST00000492270 A0A1B0GVI7 797 aa20.41■□□□□ 0.86
UPF3A-209ENST00000492270 ZNF879B4DU55 563 aa20.41■□□□□ 0.86
UPF3A-209ENST00000492270 DLGAP1O14490 977 aa20.41■□□□□ 0.86
UPF3A-209ENST00000492270 MMP9P14780 707 aa20.41■□□□□ 0.86
UPF3A-209ENST00000492270 TGM4P49221 684 aa20.41■□□□□ 0.86
UPF3A-209ENST00000492270 ACTC1P68032 377 aa20.41■□□□□ 0.86
UPF3A-209ENST00000492270 ACTA1P68133 377 aa20.41■□□□□ 0.86
UPF3A-209ENST00000492270 ZNF91Q05481 1191 aa20.41■□□□□ 0.86
UPF3A-209ENST00000492270 CDONQ4KMG0 1287 aa20.41■□□□□ 0.86
UPF3A-209ENST00000492270 ATPAF1Q5TC12 328 aaPredicted RBP20.41■□□□□ 0.86
UPF3A-209ENST00000492270 ANGPTL6Q8NI99 470 aa20.41■□□□□ 0.86
UPF3A-209ENST00000492270 ZFAND2BQ8WV99 257 aa20.41■□□□□ 0.86
UPF3A-209ENST00000492270 STMN2Q93045 179 aa20.41■□□□□ 0.86
UPF3A-209ENST00000492270 ZNF488Q96MN9 340 aa20.41■□□□□ 0.86
UPF3A-209ENST00000492270 TBX15Q96SF7 602 aa20.41■□□□□ 0.86
UPF3A-209ENST00000492270 FAM118AQ9NWS6 357 aa20.41■□□□□ 0.86
UPF3A-209ENST00000492270 RPUSD1Q9UJJ7 312 aaKnown RBP20.41■□□□□ 0.86
UPF3A-209ENST00000492270 LOC100130705A0A1B0GUX0 176 aa20.4■□□□□ 0.86
UPF3A-209ENST00000492270 DAPL1A0PJW8 107 aa20.4■□□□□ 0.86
UPF3A-209ENST00000492270 PQLC2LA1A4F0 135 aa20.4■□□□□ 0.86
UPF3A-209ENST00000492270 DHRS7CA6NNS2 312 aa20.4■□□□□ 0.86
UPF3A-209ENST00000492270 TRIM77I1YAP6 450 aa20.4■□□□□ 0.86
UPF3A-209ENST00000492270 SYT7O43581 403 aa20.4■□□□□ 0.86
UPF3A-209ENST00000492270 SYNGR1O43759 233 aa20.4■□□□□ 0.86
UPF3A-209ENST00000492270 OR12D2P58182 307 aa20.4■□□□□ 0.86
UPF3A-209ENST00000492270 ZSCAN26Q16670 478 aa20.4■□□□□ 0.86
UPF3A-209ENST00000492270 BRD3OSQ6XYD6 125 aa20.4■□□□□ 0.86
UPF3A-209ENST00000492270 ZNF788Q6ZQV5 615 aa20.4■□□□□ 0.86
UPF3A-209ENST00000492270 RDH10Q8IZV5 341 aa20.4■□□□□ 0.86
UPF3A-209ENST00000492270 PNLDC1Q8NA58 520 aaKnown RBP20.4■□□□□ 0.86
UPF3A-209ENST00000492270 DUX5Q96PT3 197 aa20.4■□□□□ 0.86
UPF3A-209ENST00000492270 SIRPDQ9H106 197 aa20.4■□□□□ 0.86
UPF3A-209ENST00000492270 EXOGQ9Y2C4 368 aaKnown RBP20.4■□□□□ 0.86
UPF3A-209ENST00000492270 TENM1Q9UKZ4 2725 aa20.39■□□□□ 0.85
UPF3A-209ENST00000492270 MDFIC2A0A1B0GVS7 189 aa20.39■□□□□ 0.85
UPF3A-209ENST00000492270 LOC107986453A0A1B0GWG9 222 aa20.39■□□□□ 0.85
UPF3A-209ENST00000492270 NKX6-3A6NJ46 265 aa20.39■□□□□ 0.85
UPF3A-209ENST00000492270 OR2AT4A6NND4 320 aa20.39■□□□□ 0.85
UPF3A-209ENST00000492270 NDUFB3O43676 98 aa20.39■□□□□ 0.85
UPF3A-209ENST00000492270 TOX4O94842 621 aa20.39■□□□□ 0.85
UPF3A-209ENST00000492270 DBTP11182 482 aaKnown RBP20.39■□□□□ 0.85
UPF3A-209ENST00000492270 HAAOP46952 286 aa20.39■□□□□ 0.85
UPF3A-209ENST00000492270 DGUOKQ16854 277 aa20.39■□□□□ 0.85
UPF3A-209ENST00000492270 RHOXF1Q8NHV9 184 aa20.39■□□□□ 0.85
UPF3A-209ENST00000492270 ZNF671Q8TAW3 534 aa20.39■□□□□ 0.85
UPF3A-209ENST00000492270 TRMT10AQ8TBZ6 339 aaKnown RBP20.39■□□□□ 0.85
UPF3A-209ENST00000492270 NPRL2Q8WTW4 380 aa20.39■□□□□ 0.85
UPF3A-209ENST00000492270 TMIGD2Q96BF3 282 aa20.39■□□□□ 0.85
UPF3A-209ENST00000492270 C1orf147Q96MC9 270 aaPredicted RBP20.39■□□□□ 0.85
UPF3A-209ENST00000492270 WDFY2Q96P53 400 aa20.39■□□□□ 0.85
UPF3A-209ENST00000492270 DNTTIP1Q9H147 329 aa20.39■□□□□ 0.85
UPF3A-209ENST00000492270 PLEKHA1Q9HB21 404 aa20.39■□□□□ 0.85
UPF3A-209ENST00000492270 AMBNQ9NP70 447 aa20.39■□□□□ 0.85
UPF3A-209ENST00000492270 IGKV1D-17A0A075B6S4 117 aa20.38■□□□□ 0.85
UPF3A-209ENST00000492270 ANKRD61A6NGH8 418 aa20.38■□□□□ 0.85
UPF3A-209ENST00000492270 SLC16A6O15403 523 aa20.38■□□□□ 0.85
UPF3A-209ENST00000492270 ECDO95905 644 aaPredicted RBP20.38■□□□□ 0.85
UPF3A-209ENST00000492270 LIPFP07098 398 aa20.38■□□□□ 0.85
UPF3A-209ENST00000492270 NANOS3P60323 173 aaKnown RBP20.38■□□□□ 0.85
UPF3A-209ENST00000492270 ARF6P62330 175 aa20.38■□□□□ 0.85
UPF3A-209ENST00000492270 UBA52P62987 128 aaKnown RBP20.38■□□□□ 0.85
UPF3A-209ENST00000492270 RUSC1-AS1Q66K80 236 aa20.38■□□□□ 0.85
UPF3A-209ENST00000492270 C9orf139Q6ZV77 190 aa20.38■□□□□ 0.85
UPF3A-209ENST00000492270 BATF2Q8N1L9 274 aa20.38■□□□□ 0.85
UPF3A-209ENST00000492270 OR2G2Q8NGZ5 317 aa20.38■□□□□ 0.85
UPF3A-209ENST00000492270 FAM216AQ8WUB2 273 aa20.38■□□□□ 0.85
UPF3A-209ENST00000492270 APH1BQ8WW43 257 aa20.38■□□□□ 0.85
UPF3A-209ENST00000492270 ZNF222Q9UK12 451 aa20.38■□□□□ 0.85
UPF3A-209ENST00000492270 MYRFQ9Y2G1 1151 aa20.38■□□□□ 0.85
UPF3A-209ENST00000492270 DNAJC9-AS1A6NH13 148 aa20.37■□□□□ 0.85
UPF3A-209ENST00000492270 SNTNA6NMZ2 147 aa20.37■□□□□ 0.85
UPF3A-209ENST00000492270 J3QT63 122 aa20.37■□□□□ 0.85
UPF3A-209ENST00000492270 PSG2P11465 335 aa20.37■□□□□ 0.85
UPF3A-209ENST00000492270 GABRA2P47869 451 aa20.37■□□□□ 0.85
UPF3A-209ENST00000492270 ACTG1P63261 375 aa20.37■□□□□ 0.85
UPF3A-209ENST00000492270 IL13RA1P78552 427 aa20.37■□□□□ 0.85
UPF3A-209ENST00000492270 UBE2V2Q15819 145 aa20.37■□□□□ 0.85
UPF3A-209ENST00000492270 LRRC10Q5BKY1 277 aa20.37■□□□□ 0.85
UPF3A-209ENST00000492270 METTL11BQ5VVY1 283 aa20.37■□□□□ 0.85
UPF3A-209ENST00000492270 RBMS3Q6XE24 437 aaKnown RBP20.37■□□□□ 0.85
UPF3A-209ENST00000492270 CALHM1Q8IU99 346 aa20.37■□□□□ 0.85
UPF3A-209ENST00000492270 ACBD7Q8N6N7 88 aa20.37■□□□□ 0.85
UPF3A-209ENST00000492270 POC1AQ8NBT0 407 aa20.37■□□□□ 0.85
UPF3A-209ENST00000492270 LY6G5BQ8NDX9 201 aa20.37■□□□□ 0.85
UPF3A-209ENST00000492270 ADI1Q9BV57 179 aa20.37■□□□□ 0.85
UPF3A-209ENST00000492270 SMPD3Q9NY59 655 aaPredicted RBP20.37■□□□□ 0.85
UPF3A-209ENST00000492270 SIGLEC5O15389 551 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms