RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 ACTC1P68032 377 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 ACTA1P68133 377 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 ELF3P78545 371 aaPredicted RBP12.49□□□□□ -0.41
USP39-217ENST00000491659 IL13RA1P78552 427 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 ODF4Q2M2E3 257 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 DMRTC1Q5HYR2 192 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 ATPAF1Q5TC12 328 aaPredicted RBP12.49□□□□□ -0.41
USP39-217ENST00000491659 MEDAGQ5VYS4 303 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 HAGHLQ6PII5 290 aaPredicted RBP12.49□□□□□ -0.41
USP39-217ENST00000491659 DUX4L9Q6RFH8 374 aaPredicted RBP12.49□□□□□ -0.41
USP39-217ENST00000491659 BRD3OSQ6XYD6 125 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 CATSPERDQ86XM0 798 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 OR14K1Q8NGZ2 314 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 TMIGD2Q96BF3 282 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 ZNF48Q96MX3 618 aaPredicted RBP12.49□□□□□ -0.41
USP39-217ENST00000491659 WDFY2Q96P53 400 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 ADI1Q9BV57 179 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 S100A14Q9HCY8 104 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 GPR173Q9NS66 373 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 DUX4Q9UBX2 424 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 GNG8Q9UK08 70 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 SLC22A13Q9Y226 551 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 GMPPBQ9Y5P6 360 aa12.49□□□□□ -0.41
USP39-217ENST00000491659 A0A1B0GTI1 187 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 TMEM89A2RUT3 159 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 SYT7O43581 403 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 ENTPD6O75354 484 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 FCN3O75636 299 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 MMP9P14780 707 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 CCL1P22362 96 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 PRTN3P24158 256 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 SNRPGP62308 76 aaKnown RBP12.48□□□□□ -0.41
USP39-217ENST00000491659 PDCD1Q15116 288 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 SLC25A30Q5SVS4 291 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 TMEM42Q69YG0 159 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 ZNF788Q6ZQV5 615 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 ZNF573Q86YE8 665 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 FGFRL1Q8N441 504 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 CCDC54Q8NEL0 328 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 ANGPTL6Q8NI99 470 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 AQP3Q92482 292 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 H1FXQ92522 213 aaKnown RBP12.48□□□□□ -0.41
USP39-217ENST00000491659 RORBQ92753 470 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 RNFT2Q96EX2 444 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 MED30Q96HR3 178 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 GAFA1Q96PS6 74 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 DUX5Q96PT3 197 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 TBX15Q96SF7 602 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 SIRPDQ9H106 197 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 ONECUT1Q9UBC0 465 aa12.48□□□□□ -0.41
USP39-217ENST00000491659 ANKRD61A6NGH8 418 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 OR2AT4A6NND4 320 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 J3QT63 122 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 HAAOP46952 286 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 GABRA2P47869 451 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 TGM4P49221 684 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 ARF6P62330 175 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 ZNF85Q03923 595 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 OCLNQ16625 522 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 SMIM21Q3B7S5 101 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 TP53I3Q53FA7 332 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 Q6ZSR3 168 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 CMTM4Q8IZR5 234 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 PQLC1Q8N2U9 271 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 GATAD2BQ8WXI9 593 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 UBE2FQ969M7 185 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 ZDHHC16Q969W1 377 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 SLC25A28Q96A46 364 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 MBOAT4Q96T53 435 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 CNTD2Q9H8S5 307 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 ACOXLQ9NUZ1 547 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 RASL12Q9NYN1 266 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 SLC25A10Q9UBX3 287 aaPredicted RBP12.47□□□□□ -0.41
USP39-217ENST00000491659 POLDIP2Q9Y2S7 368 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 KPTNQ9Y664 436 aa12.47□□□□□ -0.41
USP39-217ENST00000491659 MDFIC2A0A1B0GVS7 189 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 DAPL1A0PJW8 107 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 A6NIN4 97 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 SIGLEC5O15389 551 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 MPZL2O60487 215 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 ACAA1P09110 424 aaPredicted RBP12.46□□□□□ -0.41
USP39-217ENST00000491659 UBCP0CG48 685 aaKnown RBP12.46□□□□□ -0.41
USP39-217ENST00000491659 SELLP14151 372 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 NDUFB7P17568 137 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 AMY2BP19961 511 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 COMPP49747 757 aaPredicted RBP12.46□□□□□ -0.41
USP39-217ENST00000491659 CDONQ4KMG0 1287 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 RUSC1-AS1Q66K80 236 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 ZBTB49Q6ZSB9 765 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 KIR3DL3Q8N743 410 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 POC1AQ8NBT0 407 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 LY6G5BQ8NDX9 201 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 STMN2Q93045 179 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 LHX4Q969G2 390 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 MRPL48Q96GC5 212 aaKnown RBP12.46□□□□□ -0.41
USP39-217ENST00000491659 DMRTB1Q96MA1 342 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 DCTN5Q9BTE1 182 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 SLC7A11Q9UPY5 501 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 PCDHGB1Q9Y5G3 927 aa12.46□□□□□ -0.41
USP39-217ENST00000491659 SOX21Q9Y651 276 aaPredicted RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms