RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 OCSTAMPQ9BR26 566 aa11.24□□□□□ -0.61
VARS-227ENST00000489979 OR51I2Q9H344 312 aa11.24□□□□□ -0.61
VARS-227ENST00000489979 MUC13Q9H3R2 512 aa11.24□□□□□ -0.61
VARS-227ENST00000489979 IL20Q9NYY1 176 aa11.24□□□□□ -0.61
VARS-227ENST00000489979 USE1Q9NZ43 259 aa11.24□□□□□ -0.61
VARS-227ENST00000489979 PITPNC1Q9UKF7 332 aa11.24□□□□□ -0.61
VARS-227ENST00000489979 hCG_1809904A0A1W2PP81 198 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 A0A1W2PPE2 198 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 A0A1W2PR64 198 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 A0A1W2PRV1 198 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 RFPL4AA6NLU0 287 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 ZNF732B4DXR9 585 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 RFPL4AL1F8VTS6 287 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 GMNNO75496 209 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 OPRL1P41146 370 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 PSME3P61289 254 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 ZNF273Q14593 569 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 SSX2Q16385 188 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 LINC01590Q5TEZ4 76 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 ERI1Q8IV48 349 aaKnown RBP11.23□□□□□ -0.61
VARS-227ENST00000489979 CD177Q8N6Q3 437 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 OR9Q2Q8NGE9 314 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 OR2T27Q8NH04 317 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 ZNF671Q8TAW3 534 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 MCUR1Q96AQ8 359 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 FOXRED1Q96CU9 486 aaPredicted RBP11.23□□□□□ -0.61
VARS-227ENST00000489979 RCC1LQ96I51 464 aaKnown RBP11.23□□□□□ -0.61
VARS-227ENST00000489979 INTS14Q96SY0 518 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 TSSK6Q9BXA6 273 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 TBC1D23Q9NUY8 699 aa11.23□□□□□ -0.61
VARS-227ENST00000489979 DYNC2H1Q8NCM8 4307 aaKnown RBP11.23□□□□□ -0.61
VARS-227ENST00000489979 SYNGR1O43759 233 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 MTRF1O75570 445 aaKnown RBP11.22□□□□□ -0.61
VARS-227ENST00000489979 ALDOBP05062 364 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 ARG1P05089 322 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 FABP3P05413 133 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 H2BFMP0C1H6 154 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 HOXD3P31249 432 aaPredicted RBP11.22□□□□□ -0.61
VARS-227ENST00000489979 BLVRAP53004 296 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 GNG3P63215 75 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 DMRTC1Q5HYR2 192 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 CEP78Q5JTW2 689 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 LDLRAD2Q5SZI1 272 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 ACP7Q6ZNF0 438 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 CCDC121Q6ZUS5 278 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 RNF148Q8N7C7 305 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 OR4Q3Q8NH05 313 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 MALSU1Q96EH3 234 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 B9D2Q9BPU9 175 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 BTBD10Q9BSF8 475 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 GORASP2Q9H8Y8 452 aa11.22□□□□□ -0.61
VARS-227ENST00000489979 TBL2Q9Y4P3 447 aaKnown RBP11.22□□□□□ -0.61
VARS-227ENST00000489979 TCRBV4S1A1TA0A5B7 111 aa11.21□□□□□ -0.61
VARS-227ENST00000489979 ODF3BA8MYP8 253 aa11.21□□□□□ -0.61
VARS-227ENST00000489979 JUNBP17275 347 aaPredicted RBP11.21□□□□□ -0.61
VARS-227ENST00000489979 GSTT1P30711 240 aa11.21□□□□□ -0.61
VARS-227ENST00000489979 PRDX2P32119 198 aa11.21□□□□□ -0.61
VARS-227ENST00000489979 CEBPDP49716 269 aaPredicted RBP11.21□□□□□ -0.61
VARS-227ENST00000489979 TCTEX1D4Q5JR98 221 aa11.21□□□□□ -0.61
VARS-227ENST00000489979 RASSF6Q6ZTQ3 369 aa11.21□□□□□ -0.61
VARS-227ENST00000489979 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.21□□□□□ -0.61
VARS-227ENST00000489979 ZNF561Q8N587 486 aa11.21□□□□□ -0.61
VARS-227ENST00000489979 OR8B12Q8NGG6 310 aa11.21□□□□□ -0.61
VARS-227ENST00000489979 AQP3Q92482 292 aa11.21□□□□□ -0.61
VARS-227ENST00000489979 ZNF488Q96MN9 340 aa11.21□□□□□ -0.61
VARS-227ENST00000489979 C1orf21Q9H246 121 aa11.21□□□□□ -0.61
VARS-227ENST00000489979 MED20Q9H944 212 aa11.21□□□□□ -0.61
VARS-227ENST00000489979 RASL12Q9NYN1 266 aa11.21□□□□□ -0.61
VARS-227ENST00000489979 SACSQ9NZJ4 4579 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 C17orf98A8MV24 154 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 E9PQ18 207 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 SLC1A7O00341 560 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 DUS4LO95620 317 aaKnown RBP11.2□□□□□ -0.62
VARS-227ENST00000489979 GASTP01350 101 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 IFNGP01579 166 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 PIPP12273 146 aaPredicted RBP11.2□□□□□ -0.62
VARS-227ENST00000489979 DLX6P56179 175 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 EGFEM1PQ0D2K5 195 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 SMIM21Q3B7S5 101 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 CEACAM21Q3KPI0 293 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 SAMD4BQ5PRF9 694 aaKnown RBP11.2□□□□□ -0.62
VARS-227ENST00000489979 ZNF626Q68DY1 528 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 HAGHLQ6PII5 290 aaPredicted RBP11.2□□□□□ -0.62
VARS-227ENST00000489979 SHFQ7M4L6 423 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 CENPVQ7Z7K6 275 aaPredicted RBP11.2□□□□□ -0.62
VARS-227ENST00000489979 CALHM1Q8IU99 346 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 OR13D1Q8NGV5 346 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 FAM81AQ8TBF8 368 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 SPAG4Q9NPE6 437 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 IL1RAPQ9NPH3 570 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 INPP5EQ9NRR6 644 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 ARMC1Q9NVT9 282 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 BAIAP2Q9UQB8 552 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 TSSC4Q9Y5U2 329 aaPredicted RBP11.2□□□□□ -0.62
VARS-227ENST00000489979 LYVE1Q9Y5Y7 322 aa11.2□□□□□ -0.62
VARS-227ENST00000489979 FAM183AA6NL82 134 aa11.19□□□□□ -0.62
VARS-227ENST00000489979 F2RL2O00254 374 aa11.19□□□□□ -0.62
VARS-227ENST00000489979 KRT36O76013 467 aa11.19□□□□□ -0.62
VARS-227ENST00000489979 SOX14O95416 240 aa11.19□□□□□ -0.62
VARS-227ENST00000489979 ZNF3P17036 446 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms