RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 GCM1Q9NP62 436 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 NOX4Q9NPH5 578 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 UFSP2Q9NUQ7 469 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 TREM2Q9NZC2 230 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 SPG11Q96JI7 2443 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 RAI1Q7Z5J4 1906 aaPredicted RBP8.7□□□□□ -1.02
SKA1-204ENST00000488454 AKAP6Q13023 2319 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 FBN2P35556 2912 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 TRBV5-7A0A0A0MS05 114 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 LOC100289279A0A1B0GTE1 492 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 LRP5LA4QPB2 252 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 LYNX1G3V0Z9 82 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 ARL6IP5O75915 188 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 ALX3O95076 343 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 CYB5AP00167 134 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 LYNX1P0DP58 116 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 CD36P16671 472 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 JUNBP17275 347 aaPredicted RBP8.7□□□□□ -1.02
SKA1-204ENST00000488454 AZGP1P25311 298 aaKnown RBP8.7□□□□□ -1.02
SKA1-204ENST00000488454 THBS2P35442 1172 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 HAAOP46952 286 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 TMEM33P57088 247 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 MPPED2Q15777 294 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 SSX1Q16384 188 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 CLEC12BQ2HXU8 276 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 HSD17B12Q53GQ0 312 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 FAM76BQ5HYJ3 339 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 NKAPLQ5M9Q1 402 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 UNQ9370/PRO34162Q6UXP9 181 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 LHFPL2Q6ZUX7 228 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 SATL1Q86VE3 508 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 ZNF525Q8N782 197 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 HPSE2Q8WWQ2 592 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 FAM168AQ92567 244 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 RAB1CQ92928 201 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 TIMD4Q96H15 378 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 DERL3Q96Q80 235 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 OR51I2Q9H344 312 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 TMEM138Q9NPI0 162 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 TMEM106BQ9NUM4 274 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 C1orf123Q9NWV4 160 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 NDUFB11Q9NX14 153 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 TAS2R4Q9NYW5 299 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 SCOCQ9UIL1 159 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 SSR3Q9UNL2 185 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 FOXJ3Q9UPW0 622 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 GSTK1Q9Y2Q3 226 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 SF3B6Q9Y3B4 125 aaKnown RBP8.7□□□□□ -1.02
SKA1-204ENST00000488454 LRBAP50851 2863 aa8.7□□□□□ -1.02
SKA1-204ENST00000488454 HRNRQ86YZ3 2850 aaPredicted RBP8.69□□□□□ -1.02
SKA1-204ENST00000488454 PQLC2LA1A4F0 135 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 MEGF11A6BM72 1044 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 TRIM64CA6NLI5 447 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 CLDN25C9JDP6 229 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 NDUFS8O00217 210 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 GABRPO00591 440 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 CDIPTO14735 213 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 PPIHO43447 177 aaKnown RBP8.69□□□□□ -1.02
SKA1-204ENST00000488454 GPX5O75715 221 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 ALDOBP05062 364 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 SMIM18P0DKX4 95 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 SRMP19623 302 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 GALP22466 123 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 BDKRB2P30411 391 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 GP2P55259 537 aaKnown RBP8.69□□□□□ -1.02
SKA1-204ENST00000488454 FABP5Q01469 135 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 ZNF154Q13106 437 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 INSL4Q14641 139 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 TIMM50Q3ZCQ8 353 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 SPRNQ5BIV9 151 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 Q5PR19 223 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 HAGHLQ6PII5 290 aaPredicted RBP8.69□□□□□ -1.02
SKA1-204ENST00000488454 SCCPDHQ8NBX0 429 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 ZNF420Q8TAQ5 688 aaPredicted RBP8.69□□□□□ -1.02
SKA1-204ENST00000488454 Q8TCH9 128 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 RPL3LQ92901 407 aaKnown RBP8.69□□□□□ -1.02
SKA1-204ENST00000488454 YIPF5Q969M3 257 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 CITED4Q96RK1 184 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 GPER1Q99527 375 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 PIMREGQ9BSJ6 248 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 SSBP4Q9BWG4 385 aaPredicted RBP8.69□□□□□ -1.02
SKA1-204ENST00000488454 MRPL18Q9H0U6 180 aaKnown RBP8.69□□□□□ -1.02
SKA1-204ENST00000488454 EXOSC4Q9NPD3 245 aaKnown RBP8.69□□□□□ -1.02
SKA1-204ENST00000488454 RNF7Q9UBF6 113 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 STUB1Q9UNE7 303 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 POLDIP2Q9Y2S7 368 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 USF3Q68DE3 2245 aa8.69□□□□□ -1.02
SKA1-204ENST00000488454 ABCA12Q86UK0 2595 aa8.68□□□□□ -1.02
SKA1-204ENST00000488454 NBPF19A0A087WUL8 3843 aa8.68□□□□□ -1.02
SKA1-204ENST00000488454 IGKV1-9A0A0C4DH69 117 aa8.68□□□□□ -1.02
SKA1-204ENST00000488454 TRDV1A0A1B0GX56 115 aa8.68□□□□□ -1.02
SKA1-204ENST00000488454 TRIM64BA6NI03 449 aa8.68□□□□□ -1.02
SKA1-204ENST00000488454 TMEM178BH3BS89 294 aa8.68□□□□□ -1.02
SKA1-204ENST00000488454 PIN1P1O15428 100 aa8.68□□□□□ -1.02
SKA1-204ENST00000488454 PTBP3O95758 552 aaKnown RBP8.68□□□□□ -1.02
SKA1-204ENST00000488454 CYB5R3P00387 301 aaPredicted RBP8.68□□□□□ -1.02
SKA1-204ENST00000488454 MAS1P04201 325 aa8.68□□□□□ -1.02
SKA1-204ENST00000488454 UCHL1P09936 223 aa8.68□□□□□ -1.02
SKA1-204ENST00000488454 IGFBP3P17936 291 aaPredicted RBP8.68□□□□□ -1.02
SKA1-204ENST00000488454 FSTP19883 344 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms