RNA–Protein interactions for RNA: ENST00000483495.5

CPNE1-225, Transcript of copine 1, human

TSL 5

Gene CPNE1, Length 1,853 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-225	ENST00000483495	PDZK1IP1	Q13113	114 aa		11.43	□□□□□ -0.58
CPNE1-225	ENST00000483495	RSU1	Q15404	277 aa		11.43	□□□□□ -0.58
CPNE1-225	ENST00000483495	ACSF3	Q4G176	576 aa	Predicted RBP	11.43	□□□□□ -0.58
CPNE1-225	ENST00000483495	PLCXD3	Q63HM9	321 aa		11.43	□□□□□ -0.58
CPNE1-225	ENST00000483495	RTL6	Q6ICC9	239 aa		11.43	□□□□□ -0.58
CPNE1-225	ENST00000483495	OR52W1	Q6IF63	320 aa		11.43	□□□□□ -0.58
CPNE1-225	ENST00000483495		Q6ZT83	130 aa		11.43	□□□□□ -0.58
CPNE1-225	ENST00000483495	MDP1	Q86V88	176 aa		11.43	□□□□□ -0.58
CPNE1-225	ENST00000483495	CSNK2A3	Q8NEV1	391 aa		11.43	□□□□□ -0.58
CPNE1-225	ENST00000483495	OR56B2P	Q8NGI1	322 aa		11.43	□□□□□ -0.58
CPNE1-225	ENST00000483495	MRPS24	Q96EL2	167 aa	Known RBP	11.43	□□□□□ -0.58
CPNE1-225	ENST00000483495	RANBP3	Q9H6Z4	567 aa	Predicted RBP	11.43	□□□□□ -0.58
CPNE1-225	ENST00000483495	ELL3	Q9HB65	397 aa	Predicted RBP	11.43	□□□□□ -0.58
CPNE1-225	ENST00000483495	STARD10	Q9Y365	291 aa		11.43	□□□□□ -0.58
CPNE1-225	ENST00000483495	TMEM82	A0PJX8	343 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495		J3QW42	95 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	AKR7A2	O43488	359 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	SPRY1	O43609	319 aa	Predicted RBP	11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	ANGPTL7	O43827	346 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	NGF	P01138	241 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	HRH1	P35367	487 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	WNT5A	P41221	380 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	KIR2DL2	P43627	348 aa	Predicted RBP	11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	ACTBL2	Q562R1	376 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	VAX1	Q5SQQ9	334 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	OR2A2	Q6IF42	318 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	MRPL21	Q7Z2W9	205 aa	Known RBP	11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	GCNT2	Q8N0V5	402 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	C9orf106	Q8NAJ2	232 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	OR5M9	Q8NGP3	310 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	SNIP1	Q8TAD8	396 aa	Known RBP	11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	CCDC107	Q8WV48	283 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	FBXW5	Q969U6	566 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	WBP1	Q96G27	269 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	ZNF436	Q9C0F3	470 aa	Predicted RBP	11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	DLL4	Q9NR61	685 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	ZNF69	Q9UC07	566 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	TNRC6A	Q8NDV7	1962 aa	Known RBP	11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	CEP250	Q9BV73	2442 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	IGKV1-12	A0A0C4DH73	117 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	PQLC2L	A1A4F0	135 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	ZNF850	A8MQ14	1090 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	ZNHIT1	O43257	154 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	IGKV1D-12	P01611	117 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	CSTB	P04080	98 aa	Known RBP	11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	HOXB1	P14653	301 aa	Predicted RBP	11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	CXADR	P78310	365 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	ATPAF1	Q5TC12	328 aa	Predicted RBP	11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	NSUN5P2	Q63ZY6	315 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	RPUSD3	Q6P087	351 aa	Known RBP	11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	CD163	Q86VB7	1156 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	HOGA1	Q86XE5	327 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	SLC30A7	Q8NEW0	376 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	OR6K3	Q8NGY3	331 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	OR4K15	Q8NH41	348 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	MRGPRF	Q96AM1	343 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	POM121	Q96HA1	1249 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	CHST6	Q9GZX3	395 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	POFUT1	Q9H488	388 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	EIF3K	Q9UBQ5	218 aa	Known RBP	11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	GPR160	Q9UJ42	338 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	HSF4	Q9ULV5	492 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	ZFHX4	Q86UP3	3567 aa		11.42	□□□□□ -0.58
CPNE1-225	ENST00000483495	UBE2QL1	A1L167	161 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	HTR3B	O95264	441 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	PDGFA	P04085	211 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	ZNF14	P17017	642 aa	Predicted RBP	11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	COX5A	P20674	150 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	PRDX4	Q13162	271 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	ARFRP1	Q13795	201 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	HLX	Q14774	488 aa	Predicted RBP	11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	NKPD1	Q17RQ9	610 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	SIGIRR	Q6IA17	410 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	LAMTOR1	Q6IAA8	161 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	ZDHHC22	Q8N966	263 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495		Q8NFD4	153 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	OR52B4	Q8NGK2	314 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	CYYR1	Q96J86	154 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	PAPOLG	Q9BWT3	736 aa	Known RBP	11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	PCDHB16	Q9NRJ7	776 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	PLSCR3	Q9NRY6	295 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	DKK4	Q9UBT3	224 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	BOLA1	Q9Y3E2	137 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	FAM186A	A6NE01	2351 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	MED12L	Q86YW9	2145 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	LOC400499	M0QZD8	3231 aa		11.41	□□□□□ -0.58
CPNE1-225	ENST00000483495	FIGNL2	A6NMB9	653 aa		11.4	□□□□□ -0.58
CPNE1-225	ENST00000483495	OR2A4	O95047	310 aa		11.4	□□□□□ -0.58
CPNE1-225	ENST00000483495	GABRA6	Q16445	453 aa		11.4	□□□□□ -0.58
CPNE1-225	ENST00000483495	MICB	Q29980	383 aa		11.4	□□□□□ -0.58
CPNE1-225	ENST00000483495	CEACAM21	Q3KPI0	293 aa		11.4	□□□□□ -0.58
CPNE1-225	ENST00000483495	SCGB2B2	Q4G0G5	96 aa		11.4	□□□□□ -0.58
CPNE1-225	ENST00000483495		Q5BKY6	102 aa		11.4	□□□□□ -0.58
CPNE1-225	ENST00000483495	NLRC3	Q7RTR2	1065 aa		11.4	□□□□□ -0.58
CPNE1-225	ENST00000483495	MUC20	Q8N307	709 aa	Predicted RBP	11.4	□□□□□ -0.58
CPNE1-225	ENST00000483495	FTMT	Q8N4E7	242 aa		11.4	□□□□□ -0.58
CPNE1-225	ENST00000483495	RBMXL3	Q8N7X1	1067 aa	Known RBP	11.4	□□□□□ -0.58
CPNE1-225	ENST00000483495	C1orf162	Q8NEQ5	155 aa	Predicted RBP	11.4	□□□□□ -0.58
CPNE1-225	ENST00000483495	OR5L1	Q8NGL2	311 aa		11.4	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms