RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 C2orf54Q08AI8 447 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 IFFO1Q0D2I5 559 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 HSP90AA4PQ58FG1 418 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 CAVIN4Q5BKX8 364 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 PRR9Q5T870 116 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 PRSS54Q6PEW0 395 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 DEGS2Q6QHC5 323 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 EPGNQ6UW88 154 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 ORMDL3Q8N138 153 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 LINC00469Q8N7U9 141 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 SLC25A29Q8N8R3 303 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 CYB561A3Q8NBI2 242 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 APCDD1LQ8NCL9 501 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 OR2Z1Q8NG97 314 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 OR52K1Q8NGK4 314 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 OR5M1Q8NGP8 315 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 OR51A7Q8NH64 312 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 SFXN5Q8TD22 340 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 ING5Q8WYH8 240 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 CENPNQ96H22 339 aaPredicted RBP1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 RHOXF2Q9BQY4 288 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 GAL3ST2Q9H3Q3 398 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 DHX35Q9H5Z1 703 aaKnown RBP1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 LINC00574Q9H8X3 128 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 CSNK1G1Q9HCP0 422 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 LZTFL1Q9NQ48 299 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 CA10Q9NS85 328 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 KIAA1671Q9BY89 1806 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 FBN3Q75N90 2809 aa1.51□□□□□ -2.17
CCDC88A-212ENST00000474059 JCADQ9P266 1359 aa1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 IGHV3OR16-8A0A075B7F1 116 aa1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 LOC102724200A0A096LPH7 203 aaPredicted RBP1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 A8MWL6 223 aa1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 OR7C2O60412 319 aa1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 CSTAP01040 98 aa1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 MMP7P09237 267 aaPredicted RBP1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 PAX6P26367 422 aa1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 PRSS3P35030 304 aa1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 MLF1P58340 268 aa1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 RPL31P62899 125 aaKnown RBP1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 MAD2L1BPQ15013 274 aaPredicted RBP1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 SP6Q3SY56 376 aa1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 FAM27D1Q5T7N8 215 aa1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 HHATQ5VTY9 493 aa1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 DUPD1Q68J44 220 aa1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 MED27Q6P2C8 311 aa1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 C16orf87Q6PH81 154 aa1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 ASCC1Q8N9N2 400 aaKnown RBP1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 OR2M7Q8NG81 312 aa1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 KLF14Q8TD94 323 aaPredicted RBP1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 MRPL48Q96GC5 212 aaKnown RBP1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 RNF170Q96K19 258 aa1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 TSNAXQ99598 290 aaKnown RBP1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 STMN4Q9H169 189 aaPredicted RBP1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 ANKRD12Q6UB98 2062 aa1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 AQRO60306 1485 aaKnown RBP eCLIP1.5□□□□□ -2.17
CCDC88A-212ENST00000474059 ADAMTSL3P82987 1691 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 MROH5Q6ZUA9 1318 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 C2orf16Q68DN1 1984 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 IGKV3D-11A0A0A0MRZ8 115 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 ANKRD20A5PA0PJZ0 165 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 PRAMEF26H0Y7S4 382 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 H7C2Y5 167 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 NDUFS5O43920 106 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 MAS1P04201 325 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 PTNP21246 168 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 HTR2CP28335 458 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 MPV17P39210 176 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 GDI2P50395 445 aaKnown RBP1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 ERFP50548 548 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 ATP5J2P56134 94 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 CARD18P57730 90 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 TAS2R60P59551 318 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 RBX1P62877 108 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 GRB2P62993 217 aaKnown RBP1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 STK38Q15208 465 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 HNRNPA1L2Q32P51 320 aaKnown RBP1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 NDUFAF6Q330K2 333 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 FBXL19-AS1Q494R0 122 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 C6orf183Q5T699 404 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 THOC7Q6I9Y2 204 aaKnown RBP1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 SLC25A25Q6KCM7 469 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 MORN3Q6PF18 240 aaPredicted RBP1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 OR13C9Q8NGT0 318 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 NDNFQ8TB73 568 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 ZFAND1Q8TCF1 268 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 MITD1Q8WV92 249 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 HGDQ93099 445 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 FAM131CQ96AQ9 280 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 C20orf144Q9BQM9 153 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 MAP1LC3CQ9BXW4 147 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 MS4A8Q9BY19 250 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 TM6SF2Q9BZW4 377 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 C6orf50Q9HD87 102 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 TFR2Q9UP52 801 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 CFL2Q9Y281 166 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 BZW2Q9Y6E2 419 aaKnown RBP1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 ENPP4Q9Y6X5 453 aa1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 SETD1AO15047 1707 aaKnown RBP1.49□□□□□ -2.17
CCDC88A-212ENST00000474059 NPHP4O75161 1426 aaPredicted RBP1.49□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms