RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 LINC01006Q8NI28 216 aa15.4■□□□□ 0.06
CCDC88B-206ENST00000473405 NPRL2Q8WTW4 380 aa15.4■□□□□ 0.06
CCDC88B-206ENST00000473405 ASB17Q8WXJ9 295 aa15.4■□□□□ 0.06
CCDC88B-206ENST00000473405 AQP3Q92482 292 aa15.4■□□□□ 0.06
CCDC88B-206ENST00000473405 PPP1R14AQ96A00 147 aa15.4■□□□□ 0.06
CCDC88B-206ENST00000473405 HIST1H2AAQ96QV6 131 aa15.4■□□□□ 0.06
CCDC88B-206ENST00000473405 ELL3Q9HB65 397 aaPredicted RBP15.4■□□□□ 0.06
CCDC88B-206ENST00000473405 FAM96BQ9Y3D0 163 aa15.4■□□□□ 0.06
CCDC88B-206ENST00000473405 NPFFO15130 113 aa15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 FBP1P09467 338 aa15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 PSG2P11465 335 aa15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 ATP6V1B1P15313 513 aa15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 EPHA2P29317 976 aa15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 GUCA2AQ02747 115 aa15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 ZNF829Q3KNS6 432 aaPredicted RBP15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 ZBTB37Q5TC79 503 aa15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 BRICD5Q6PL45 260 aa15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 C1orf122Q6ZSJ8 110 aa15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 COMMD2Q86X83 199 aa15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 ZNRF1Q8ND25 227 aa15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 BCAS4Q8TDM0 211 aa15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 ITFG2Q969R8 447 aa15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 CNN2Q99439 309 aaKnown RBP15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 DPAGT1Q9H3H5 408 aa15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 MAB21L2Q9Y586 359 aa15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 TMEM14AQ9Y6G1 99 aa15.39■□□□□ 0.05
CCDC88B-206ENST00000473405 A0A1W2PRD5 423 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 A0A1W2PRF3 423 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 A0A1W2PRM7 423 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 OR5B21A6NL26 309 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 M0R1W7 72 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 MITFO75030 526 aaPredicted RBP15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 TTRP02766 147 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 NDUFB7P17568 137 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 SAA4P35542 130 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 RIDAP52758 137 aaKnown RBP15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 PROK1P58294 105 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 ESRRGP62508 458 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 EFNB1P98172 346 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 RIPPLY1Q0D2K3 151 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 AADACL4Q5VUY2 407 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 PLCXD3Q63HM9 321 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 OR5A2Q8NGI9 324 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 SDSLQ96GA7 329 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 CADM1Q9BY67 442 aaKnown RBP15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 ADGRL4Q9HBW9 690 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 VPREB3Q9UKI3 123 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 PIGLQ9Y2B2 252 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 RNF114Q9Y508 228 aa15.38■□□□□ 0.05
CCDC88B-206ENST00000473405 A0A1W2PQ09 198 aa15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 DHRS3O75911 302 aa15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 EEF1B2P24534 225 aaKnown RBP15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 GABRA2P47869 451 aa15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 UBE2E1P51965 193 aa15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 CXCR4P61073 352 aa15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 SLX4IPQ5VYV7 408 aa15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 HCP5Q6MZN7 132 aa15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 HAGHLQ6PII5 290 aaPredicted RBP15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 MOB3CQ70IA8 216 aa15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 MEPCEQ7L2J0 689 aaKnown RBP15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 THAP5Q7Z6K1 395 aa15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 ZSCAN4Q8NAM6 433 aaPredicted RBP15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 OR5K1Q8NHB7 308 aa15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 LRTOMTQ8WZ04 291 aa15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 DUS3LQ96G46 650 aaKnown RBP15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 METTL8Q9H825 291 aaKnown RBP15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 KRT84Q9NSB2 600 aa15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 ENPP5Q9UJA9 477 aa15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 IKZF2Q9UKS7 526 aa15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 CAB39Q9Y376 341 aaPredicted RBP15.37■□□□□ 0.05
CCDC88B-206ENST00000473405 MEIOCA2RUB1 952 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 ZAR1LA6NP61 321 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 MAGEB4O15481 346 aaPredicted RBP15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 GSC2O15499 205 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 MTRF1O75570 445 aaKnown RBP15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 CLPXO76031 633 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 ATP6AP1Q15904 470 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 OCLNQ16625 522 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 NXNL2Q5VZ03 156 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 NCR3LG1Q68D85 454 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 TMEM42Q69YG0 159 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 C12orf73Q69YU5 71 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 ZNF322Q6U7Q0 402 aaPredicted RBP15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 ACP7Q6ZNF0 438 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 GDPGP1Q6ZNW5 385 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 PLEKHG7Q6ZR37 379 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 Q6ZSV7 163 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 TCEANCQ8N8B7 351 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 POC1AQ8NBT0 407 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 TMEM185AQ8NFB2 350 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 TMEM163Q8TC26 289 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 ZNF488Q96MN9 340 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 APOL4Q9BPW4 351 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 PRRG3Q9BZD7 231 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 MOB1AQ9H8S9 216 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 DSCAML1Q8TD84 2053 aa15.36■□□□□ 0.05
CCDC88B-206ENST00000473405 TRBV23-1A0A0A0MS06 115 aa15.35■□□□□ 0.05
CCDC88B-206ENST00000473405 SLC22A31A6NKX4 558 aa15.35■□□□□ 0.05
CCDC88B-206ENST00000473405 LOC110117498-PIK3R3F6TDL0 507 aa15.35■□□□□ 0.05
CCDC88B-206ENST00000473405 SYNGR1O43759 233 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms