RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 COPS4Q9BT78 406 aa6□□□□□ -1.45
USP54-208ENST00000461520 ADAT1Q9BUB4 502 aaKnown RBP6□□□□□ -1.45
USP54-208ENST00000461520 UFSP2Q9NUQ7 469 aa6□□□□□ -1.45
USP54-208ENST00000461520 ACTR3BQ9P1U1 418 aa6□□□□□ -1.45
USP54-208ENST00000461520 ERVK-18Q9QC07 812 aa6□□□□□ -1.45
USP54-208ENST00000461520 BAIAP2Q9UQB8 552 aa6□□□□□ -1.45
USP54-208ENST00000461520 ARL2BPQ9Y2Y0 163 aa6□□□□□ -1.45
USP54-208ENST00000461520 COMMD3-BMI1R4GMX3 469 aa6□□□□□ -1.45
USP54-208ENST00000461520 ARHGAP32A7KAX9 2087 aa6□□□□□ -1.45
USP54-208ENST00000461520 IGHV3OR16-10A0A075B7F0 116 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 TRAV38-1A0A0B4J264 116 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 OOEPA6NGQ2 149 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 ZNF879B4DU55 563 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 ZNF878C9JN71 531 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 RAB27BO00194 218 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 LGALS8O00214 317 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 P2RY10O00398 339 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 ZNF593O00488 134 aaPredicted RBP5.99□□□□□ -1.45
USP54-208ENST00000461520 TNFRSF13BO14836 293 aaPredicted RBP5.99□□□□□ -1.45
USP54-208ENST00000461520 XRCC2O43543 280 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 SPARCP09486 303 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 SLC15A1P46059 708 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 PRKXP51817 358 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 SLC25A1P53007 311 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 FGF12P61328 243 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 RPS16P62249 146 aaKnown RBP5.99□□□□□ -1.45
USP54-208ENST00000461520 GRB2P62993 217 aaKnown RBP5.99□□□□□ -1.45
USP54-208ENST00000461520 DEFA6Q01524 100 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 TAF13Q15543 124 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 OR8B8Q15620 311 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 DEFB112Q30KQ8 113 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 PDLIM3Q53GG5 364 aaPredicted RBP5.99□□□□□ -1.45
USP54-208ENST00000461520 GLYATL3Q5SZD4 288 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 GPR157Q5UAW9 335 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 PIGWQ7Z7B1 504 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 ARHGAP24Q8N264 748 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 C11orf44Q8N8P7 122 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 AQP11Q8NBQ7 271 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 C19orf18Q8NEA5 215 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 OR2T33Q8NG76 320 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 OR51L1Q8NGJ5 315 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 OR8D4Q8NGM9 314 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 OR9Q1Q8NGQ5 310 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 OR2AE1Q8NHA4 323 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 SLAMF6Q96DU3 332 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 TECTBQ96PL2 329 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 TSSK6Q9BXA6 273 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 DGCR6LQ9BY27 220 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 NMNAT2Q9BZQ4 307 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 SLITRK2Q9H156 845 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 MMADHCQ9H3L0 296 aaPredicted RBP5.99□□□□□ -1.45
USP54-208ENST00000461520 MUC13Q9H3R2 512 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 MAGIXQ9H6Y5 334 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 SP140LQ9H930 580 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 NOX4Q9NPH5 578 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 CENPMQ9NSP4 180 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 TBC1D23Q9NUY8 699 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 ARL8BQ9NVJ2 186 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 KIF17Q9P2E2 1029 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 CTSZQ9UBR2 303 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 MMP24Q9Y5R2 645 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 CMYA5Q8N3K9 4069 aa5.99□□□□□ -1.45
USP54-208ENST00000461520 PRKDCP78527 4128 aaKnown RBP5.98□□□□□ -1.45
USP54-208ENST00000461520 A0A1B0GUS0 222 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 MDFIC2A0A1B0GVS7 189 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 C5orf63A6NC05 138 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 A6NLC8 198 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 ANKRD30BLA7E2S9 258 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 SRRM5B3KS81 715 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 ADAM20O43506 726 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 ECDO95905 644 aaPredicted RBP5.98□□□□□ -1.45
USP54-208ENST00000461520 LHBP01229 141 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 IFNGP01579 166 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 APOC1P02654 83 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 GYPBP06028 91 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 PSKH1P11801 424 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 MMP9P14780 707 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 ZNF3P17036 446 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 SPI1P17947 270 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 ATP6V1B2P21281 511 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 ANOS1P23352 680 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 CFL1P23528 166 aaKnown RBP5.98□□□□□ -1.45
USP54-208ENST00000461520 GRK5P34947 590 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 CFHR2P36980 270 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 GNGT1P63211 74 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 ZNF91Q05481 1191 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 CRMP1Q14194 572 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 GK3PQ14409 553 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 RBMS2Q15434 407 aaKnown RBP5.98□□□□□ -1.45
USP54-208ENST00000461520 MICAQ29983 383 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 C4orf46Q504U0 113 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 LINC01590Q5TEZ4 76 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 TEX36Q5VZQ5 186 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 OR2T5Q6IEZ7 315 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 LCN8Q6JVE9 175 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 BRD3OSQ6XYD6 125 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 TMEM86BQ8N661 226 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 GCSAMQ8N6F7 178 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 OR56B2PQ8NGI1 322 aa5.98□□□□□ -1.45
USP54-208ENST00000461520 OR2T29Q8NH02 315 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms