RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	FIP1L1	Q6UN15	594 aa	Known RBP	7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	C9orf139	Q6ZV77	190 aa		7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	MEPCE	Q7L2J0	689 aa	Known RBP	7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	VMO1	Q7Z5L0	202 aa		7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	ZNF679	Q8IYX0	411 aa		7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	TMEM163	Q8TC26	289 aa		7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	GATAD2B	Q8WXI9	593 aa		7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	OR8B4	Q96RC9	309 aa		7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	TLNRD1	Q9H1K6	362 aa		7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	RIBC2	Q9H4K1	309 aa		7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	UNKL	Q9H9P5	680 aa	Known RBP	7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	ELL3	Q9HB65	397 aa	Predicted RBP	7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	ADGRL4	Q9HBW9	690 aa		7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	ABCB9	Q9NP78	766 aa		7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	SIRT7	Q9NRC8	400 aa		7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	HAO2	Q9NYQ3	351 aa		7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	PIGL	Q9Y2B2	252 aa		7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	AP4S1	Q9Y587	144 aa		7.16	□□□□□ -1.26
RFX3-209	ENST00000451859	IGHV1-69D	A0A0B4J2H0	117 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859		A0A0U1RQK1	487 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859		A0A0U1RQV5	110 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859		A0A1W2PQ09	198 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	SLC22A31	A6NKX4	558 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	ZAR1L	A6NP61	321 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	ZNF670-ZNF695	F2Z2N8	137 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	CIB2	O75838	187 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	ECD	O95905	644 aa	Predicted RBP	7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	IGHV1-69	P01742	117 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	MELTF	P08582	738 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	AMY2B	P19961	511 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	RASSF2	P50749	326 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	CAPZA1	P52907	286 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	GNG3	P63215	75 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	RIPPLY1	Q0D2K3	151 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	KLRD1	Q13241	179 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	PDCD1	Q15116	288 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	DGUOK	Q16854	277 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	LRRC10	Q5BKY1	277 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	C12orf73	Q69YU5	71 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	ZDHHC13	Q8IUH4	622 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	TMEM185A	Q8NFB2	350 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	OR51G2	Q8NGK0	314 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	OR10Z1	Q8NGY1	313 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	ASB17	Q8WXJ9	295 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	ZNF488	Q96MN9	340 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	GAFA1	Q96PS6	74 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	RAB3IP	Q96QF0	476 aa	Predicted RBP	7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	CIB1	Q99828	191 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	CHIA	Q9BZP6	476 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	CNTD2	Q9H8S5	307 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	GPR173	Q9NS66	373 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	ACOXL	Q9NUZ1	547 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	NLK	Q9UBE8	527 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	KAAG1	Q9UBP8	84 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	SLC25A10	Q9UBX3	287 aa	Predicted RBP	7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	OAZ3	Q9UMX2	235 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	TMEM14A	Q9Y6G1	99 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859	TRRAP	Q9Y4A5	3859 aa		7.15	□□□□□ -1.26
RFX3-209	ENST00000451859		A0A1B0GVI7	797 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	OR2AT4	A6NND4	320 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	CLDN34	H7C241	214 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	SPRY1	O43609	319 aa	Predicted RBP	7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	ZNF254	O75437	659 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	ATP5H	O75947	161 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	IGHV4-59	P01825	116 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	TTR	P02766	147 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	CRYBA1	P05813	215 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	FCGR1A	P12314	374 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	POLR2I	P36954	125 aa	Known RBP	7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	CEBPD	P49716	269 aa	Predicted RBP	7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	IL13RA1	P78552	427 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	ROM1	Q03395	351 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	CEACAM21	Q3KPI0	293 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	CDON	Q4KMG0	1287 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	ZNF684	Q5T5D7	378 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	AADACL4	Q5VUY2	407 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	NXNL2	Q5VZ03	156 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	KDM4D	Q6B0I6	523 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	C16orf87	Q6PH81	154 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	DEGS2	Q6QHC5	323 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859		Q6YL49	198 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	ZNF788	Q6ZQV5	615 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	SSX6	Q7RTT6	188 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	GID4	Q8IVV7	300 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	CMTM4	Q8IZR5	234 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	FAM185A	Q8N0U4	392 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	PNKD	Q8N490	385 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	YIPF7	Q8N8F6	280 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	ZNRF1	Q8ND25	227 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	OR10H4	Q8NGA5	316 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	TRMT10A	Q8TBZ6	339 aa	Known RBP	7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	NPRL2	Q8WTW4	380 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	WFDC12	Q8WWY7	111 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	PYDC1	Q8WXC3	89 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	TMIGD2	Q96BF3	282 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	C12orf43	Q96C57	262 aa	Known RBP	7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	ZNF747	Q9BV97	191 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	GABARAPL1	Q9H0R8	117 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	OR51I2	Q9H344	312 aa		7.14	□□□□□ -1.27
RFX3-209	ENST00000451859	NUFIP1	Q9UHK0	495 aa	Known RBP	7.14	□□□□□ -1.27

Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms