RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 FLNBO75369 2602 aaKnown RBP1.99□□□□□ -2.09
VPS41-207ENST00000439468 TEP1Q99973 2627 aaKnown RBP1.99□□□□□ -2.09
VPS41-207ENST00000439468 CEP162Q5TB80 1403 aa1.99□□□□□ -2.09
VPS41-207ENST00000439468 SMG6Q86US8 1419 aaKnown RBP1.99□□□□□ -2.09
VPS41-207ENST00000439468 ANKRD31Q8N7Z5 1873 aa1.99□□□□□ -2.09
VPS41-207ENST00000439468 SPEGQ15772 3267 aa1.99□□□□□ -2.09
VPS41-207ENST00000439468 ZSWIM8A7E2V4 1837 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 ITGB4P16144 1822 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 DNAH12Q6ZR08 3092 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 DMXL1Q9Y485 3027 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 GOLGA6L7A0A1B0GV03 622 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 ANKRD65E5RJM6 399 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 H0YIV9 168 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 BPY2O14599 106 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 SLC22A5O76082 557 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 CCNE2O96020 404 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 RALBP11234 206 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 CD82P27701 267 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 CCT6AP40227 531 aaKnown RBP1.98□□□□□ -2.09
VPS41-207ENST00000439468 CXCL12P48061 93 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 SLC39A6Q13433 755 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 DOC2AQ14183 400 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 C16orf72Q14CZ0 275 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 LY6EQ16553 131 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 ZNF829Q3KNS6 432 aaPredicted RBP1.98□□□□□ -2.09
VPS41-207ENST00000439468 RNASE13Q5GAN3 156 aaKnown RBP1.98□□□□□ -2.09
VPS41-207ENST00000439468 BEX5Q5H9J7 111 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 OTUD6AQ7L8S5 288 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 OSR2Q8N2R0 312 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 TMEM256Q8N2U0 113 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 ZNF561Q8N587 486 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 TRAM1L1Q8N609 369 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 OR10W1Q8NGF6 305 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 LINC01560Q8TB33 94 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 GHSRQ92847 366 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 OR10C1Q96KK4 312 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 OPALINQ96PE5 141 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 CDX2Q99626 313 aaPredicted RBP1.98□□□□□ -2.09
VPS41-207ENST00000439468 SPIN2AQ99865 258 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 CTRCQ99895 268 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 SPIN2BQ9BPZ2 258 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 RRAGDQ9NQL2 400 aaPredicted RBP1.98□□□□□ -2.09
VPS41-207ENST00000439468 FBXO8Q9NRD0 319 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 RGS18Q9NS28 235 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 DOCK9Q9BZ29 2069 aa1.98□□□□□ -2.09
VPS41-207ENST00000439468 ANKRD17O75179 2603 aaKnown RBP1.97□□□□□ -2.09
VPS41-207ENST00000439468 FAM208BQ5VWN6 2430 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 LOC100653049A0A140TA62 436 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 A0A1W2PRD5 423 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 C7orf66A4D0T2 115 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 A6NDN8 102 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 KRT34O76011 436 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 GLSO94925 669 aaPredicted RBP1.97□□□□□ -2.09
VPS41-207ENST00000439468 TGM6O95932 706 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 CATP04040 527 aaKnown RBP1.97□□□□□ -2.09
VPS41-207ENST00000439468 TALDO1P37837 337 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 BCAP31P51572 246 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 RAB11AP62491 216 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 PITPNAQ00169 270 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 ZNF33AQ06730 810 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 RAB11BQ15907 218 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 ZNF880Q6PDB4 577 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 UNC93AQ86WB7 457 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 APRG1Q8IVJ8 170 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 MYOCDQ8IZQ8 938 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 ZNF615Q8N8J6 731 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 INO80EQ8NBZ0 244 aaPredicted RBP1.97□□□□□ -2.09
VPS41-207ENST00000439468 TTLQ8NG68 377 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 LILRB4Q8NHJ6 448 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 ZNF721Q8TF20 911 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 ISOC2Q96AB3 205 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 HAUS1Q96CS2 278 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 CERS2Q96G23 380 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 SCGB3A2Q96PL1 93 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 CYP3A43Q9HB55 503 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 RBFOX1Q9NWB1 397 aaKnown RBP1.97□□□□□ -2.09
VPS41-207ENST00000439468 MCUBQ9NWR8 336 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 GGA2Q9UJY4 613 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 FARSAQ9Y285 508 aaKnown RBP1.97□□□□□ -2.09
VPS41-207ENST00000439468 DOCK8Q8NF50 2099 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 LRRC37A2A6NM11 1700 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 CPDO75976 1380 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 CCNB3Q8WWL7 1395 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 USP9XQ93008 2570 aaPredicted RBP1.97□□□□□ -2.09
VPS41-207ENST00000439468 KMT2EQ8IZD2 1858 aa1.97□□□□□ -2.09
VPS41-207ENST00000439468 ADGRA3Q8IWK6 1321 aa1.96□□□□□ -2.1
VPS41-207ENST00000439468 SMG1Q96Q15 3661 aaKnown RBP1.96□□□□□ -2.1
VPS41-207ENST00000439468 ARPC4-TTLL3A0A0A6YYG9 625 aa1.96□□□□□ -2.1
VPS41-207ENST00000439468 OR5H1A6NKK0 313 aa1.96□□□□□ -2.1
VPS41-207ENST00000439468 PDZK1P1A8MUH7 402 aa1.96□□□□□ -2.1
VPS41-207ENST00000439468 BET1O15155 118 aa1.96□□□□□ -2.1
VPS41-207ENST00000439468 CASC3O15234 703 aaKnown RBP1.96□□□□□ -2.1
VPS41-207ENST00000439468 SLC16A7O60669 478 aa1.96□□□□□ -2.1
VPS41-207ENST00000439468 MPDU1O75352 247 aa1.96□□□□□ -2.1
VPS41-207ENST00000439468 PTTG1O95997 202 aa1.96□□□□□ -2.1
VPS41-207ENST00000439468 ZNF688P0C7X2 276 aa1.96□□□□□ -2.1
VPS41-207ENST00000439468 POLR2MP0CAP2 368 aa1.96□□□□□ -2.1
VPS41-207ENST00000439468 PFN2P35080 140 aa1.96□□□□□ -2.1
VPS41-207ENST00000439468 PPICP45877 212 aa1.96□□□□□ -2.1
VPS41-207ENST00000439468 DNAJC3Q13217 504 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms