RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 TNFRSF19Q9NS68 423 aa15.34■□□□□ 0.05
PTPRF-209ENST00000438120 DBX1A6NMT0 343 aa15.34■□□□□ 0.05
PTPRF-209ENST00000438120 SCO1O75880 301 aa15.34■□□□□ 0.05
PTPRF-209ENST00000438120 OR3A4PP47883 348 aa15.34■□□□□ 0.05
PTPRF-209ENST00000438120 TRA2AQ13595 282 aaKnown RBP eCLIP15.34■□□□□ 0.05
PTPRF-209ENST00000438120 CTF1Q16619 201 aa15.34■□□□□ 0.05
PTPRF-209ENST00000438120 TMEM88Q6PEY1 159 aa15.34■□□□□ 0.05
PTPRF-209ENST00000438120 ZNF683Q8IZ20 524 aa15.34■□□□□ 0.05
PTPRF-209ENST00000438120 LYG1Q8N1E2 194 aa15.34■□□□□ 0.05
PTPRF-209ENST00000438120 GALNT16Q8N428 558 aa15.34■□□□□ 0.05
PTPRF-209ENST00000438120 ZFPL1O95159 310 aa15.33■□□□□ 0.05
PTPRF-209ENST00000438120 LINC00299Q6ZSB3 139 aa15.33■□□□□ 0.05
PTPRF-209ENST00000438120 KIAA1958Q8N8K9 716 aa15.33■□□□□ 0.05
PTPRF-209ENST00000438120 CTDSP1Q9GZU7 261 aa15.33■□□□□ 0.05
PTPRF-209ENST00000438120 TREM2Q9NZC2 230 aa15.33■□□□□ 0.05
PTPRF-209ENST00000438120 ERRFI1Q9UJM3 462 aaPredicted RBP15.33■□□□□ 0.05
PTPRF-209ENST00000438120 FCGR3BO75015 233 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 PNLIPRP3Q17RR3 467 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 PSG11Q9UQ72 335 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 SLC37A1P57057 533 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 SSPNQ14714 243 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 LRRTM1Q86UE6 522 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 HGDQ93099 445 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 K7EQS6 105 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 RNPS1Q15287 305 aaKnown RBP15.33■□□□□ 0.04
PTPRF-209ENST00000438120 OR2T6Q8NHC8 308 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 POM121L2Q96KW2 1035 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 MOGAT1Q96PD6 335 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 ZFP64Q9NPA5 681 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 A0A1W2PRD5 423 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 A0A1W2PRF3 423 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 A0A1W2PRM7 423 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 HPP00738 406 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 MPGP29372 298 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 FABP9Q0Z7S8 132 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 FUT7Q11130 342 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 ENDOGQ14249 297 aaKnown RBP15.33■□□□□ 0.04
PTPRF-209ENST00000438120 TMEM128Q5BJH2 165 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 MISP3Q96FF7 219 aa15.33■□□□□ 0.04
PTPRF-209ENST00000438120 ZNF17P17021 662 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 ARL2-SNX15V9GYD0 113 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 A0A1W2PPQ1 181 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 ZNF785A8K8V0 405 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 COX7A1P24310 79 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 ETFDHQ16134 617 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 THSD4Q6ZMP0 1018 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 NIT2Q9NQR4 276 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 CACNA1CQ13936 2221 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 RFPL4AA6NLU0 287 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 RFPL4AL1F8VTS6 287 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 G3V3Q6 166 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 NTN1O95631 604 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 BTLAQ7Z6A9 289 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 MBP02144 154 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 OPN1MWP04001 364 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 OPN1MW2P0DN77 364 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 OPN1MW3P0DN78 364 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 PCED1AQ9H1Q7 454 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 KCNK15Q9H427 330 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 ZNF385DQ9H6B1 395 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 OR5H1A6NKK0 313 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 WNT1P04628 370 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 SULT1A3P0DMM9 295 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 SULT1A4P0DMN0 295 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 Q56UQ5 140 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 AKR1E2Q96JD6 320 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 CABLES2Q9BTV7 478 aa15.32■□□□□ 0.04
PTPRF-209ENST00000438120 MED19A0JLT2 244 aaPredicted RBP15.31■□□□□ 0.04
PTPRF-209ENST00000438120 SLC25A1P53007 311 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 TAGLNQ01995 201 aaKnown RBP15.31■□□□□ 0.04
PTPRF-209ENST00000438120 F5P12259 2224 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 RD3LP0DJH9 198 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 H3F3AP84243 136 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 HES4Q9HCC6 221 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 COL22A1Q8NFW1 1626 aaPredicted RBP15.31■□□□□ 0.04
PTPRF-209ENST00000438120 RP1L1Q8IWN7 2480 aaPredicted RBP15.31■□□□□ 0.04
PTPRF-209ENST00000438120 DHRS3O75911 302 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 PTGFRP43088 359 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 SLC36A1Q7Z2H8 476 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 OR4D9Q8NGE8 314 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 CT55Q8WUE5 264 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 SPSB1Q96BD6 273 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 ZNF768Q9H5H4 540 aaKnown RBP15.31■□□□□ 0.04
PTPRF-209ENST00000438120 LAMP3Q9UQV4 416 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 ALX3O95076 343 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 SOX8P57073 446 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 EIF3IQ13347 325 aaKnown RBP15.31■□□□□ 0.04
PTPRF-209ENST00000438120 LRRC29Q8WV35 223 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 ICAM5Q9UMF0 924 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 TRIM77I1YAP6 450 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 LINC01387J3KSC0 135 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 M0QZ24 198 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 CDC42EP2O14613 210 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 CCL4P13236 92 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 NCR3LG1Q68D85 454 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 SSX7Q7RTT5 188 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 ZNF485Q8NCK3 441 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 TAAR3PQ9P1P4 343 aa15.31■□□□□ 0.04
PTPRF-209ENST00000438120 ZNF320A2RRD8 509 aa15.3■□□□□ 0.04
PTPRF-209ENST00000438120 MASP2O00187 686 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms