RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ZNF384Q8TF68 577 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 ZNF729A6NN14 1252 aaPredicted RBP6.49□□□□□ -1.37
VPS53-204ENST00000437048 GUCA2BQ16661 112 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 CAMTA1Q9Y6Y1 1673 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.49□□□□□ -1.37
VPS53-204ENST00000437048 BCL3P20749 454 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 FOXA1P55317 472 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 MORN1Q5T089 497 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 OSR2Q8N2R0 312 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 OR1L3Q8NH93 324 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 RXFP4Q8TDU9 374 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 ST6GAL2Q96JF0 529 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 CTSFQ9UBX1 484 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 SEMA4FO95754 770 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 FCARP24071 287 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 CLN8Q9UBY8 286 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 ANKRD20A5PA0PJZ0 165 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 TMEM30CPA0ZSE6 113 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 M0R135 149 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 CD3DP04234 171 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 PRR35P0CG20 571 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 SLC25A6P12236 298 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 NTHL1P78549 312 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 ZNF799Q96GE5 643 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 CCDC163A0A0D9SF12 145 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 CXorf1O96002 111 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 CYB5R3P00387 301 aaPredicted RBP6.49□□□□□ -1.37
VPS53-204ENST00000437048 TWIST1Q15672 202 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 VMA21Q3ZAQ7 101 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 MRGPRX1Q96LB2 322 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 MENTQ9BUN1 341 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 GFYI3L273 518 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 NDUFS8O00217 210 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 HAAOP46952 286 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 METAP1P53582 386 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 TGIF2LXQ8IUE1 241 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 PIGCQ92535 297 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 PEX11GQ96HA9 241 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 CER1O95813 267 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 ABOP16442 354 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 DCTDP32321 178 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 HYAL2Q12891 473 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 SCAMP4Q969E2 229 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 ING1Q9UK53 422 aaPredicted RBP6.48□□□□□ -1.37
VPS53-204ENST00000437048 ZNF25P17030 456 aaPredicted RBP6.48□□□□□ -1.37
VPS53-204ENST00000437048 B2MP61769 119 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 SHBQ15464 509 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 TCF23Q7RTU1 214 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FER1L6-AS2Q96M78 137 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 DIRC2Q96SL1 478 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 NMNAT3Q96T66 252 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 SLC46A2Q9BY10 475 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 GLIPR2Q9H4G4 154 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FOCADQ5VW36 1801 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FAM90A10PA6NDY2 464 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FAM90A18PA6NE21 464 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FAM90A16PA6NEW6 464 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FAM90A20PA6NIJ5 464 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FAM90A8PA6NJQ4 464 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FAM90A7PA6NKC0 464 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FAM90A22PA8MWA6 464 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FAM90A12PA8MX19 464 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FAM90A5PA8MXJ8 464 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FAM90A23PA8MXZ1 464 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 TUSC2O75896 110 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 IGF2P01344 180 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FAM90A15PP0C7V4 464 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FAM90A13PP0C7W8 464 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FAM90A14PP0C7W9 464 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FAM90A24PP0C7X0 464 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 CDX1P47902 265 aaPredicted RBP6.48□□□□□ -1.37
VPS53-204ENST00000437048 CDC34P49427 236 aaPredicted RBP6.48□□□□□ -1.37
VPS53-204ENST00000437048 CARD17Q5XLA6 110 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 DHRS13Q6UX07 377 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 C11orf40Q8WZ69 217 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 HES4Q9HCC6 221 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 MYOZ1Q9NP98 299 aaPredicted RBP6.48□□□□□ -1.37
VPS53-204ENST00000437048 ZNF195O14628 629 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 CA7P43166 264 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 TMEM211Q6ICI0 200 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 SIRT3Q9NTG7 399 aaPredicted RBP6.48□□□□□ -1.37
VPS53-204ENST00000437048 GBF1Q92538 1859 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 RER1O15258 196 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 HTR1DP28221 377 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 MAVSQ7Z434 540 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 TGIF2LYQ8IUE0 185 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 LINC00518Q8N0U6 118 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 OXGR1Q96P68 337 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 CDX2Q99626 313 aaPredicted RBP6.48□□□□□ -1.37
VPS53-204ENST00000437048 COX7A2P2O60397 106 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 UTS2O95399 124 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FBXO45P0C2W1 286 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 ATF1P18846 271 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 RAD52P43351 418 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 CLN3Q13286 438 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 DCAF16Q9NXF7 216 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 CCR5P51681 352 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FABP5Q01469 135 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 PIANPQ8IYJ0 282 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 OR5D13Q8NGL4 314 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms