RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 GPR37O15354 613 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 SYNGR1O43759 233 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 E2F6O75461 281 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 OSMP13725 252 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 ALOX5APP20292 161 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 UBE2E1P51965 193 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 HAGHLQ6PII5 290 aaPredicted RBP9.44□□□□□ -0.9
USP4-204ENST00000416417 TRPM8Q7Z2W7 1104 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 MKXQ8IYA7 352 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 ARHGAP24Q8N264 748 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 FTMTQ8N4E7 242 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 OR4M1Q8NGD0 313 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 AJUBAQ96IF1 538 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 TEAD3Q99594 435 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 GPR84Q9NQS5 396 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 TVP23BQ9NYZ1 205 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 ZNF222Q9UK12 451 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 GTF2A1LQ9UNN4 478 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 FOXJ3Q9UPW0 622 aa9.44□□□□□ -0.9
USP4-204ENST00000416417 NOTCH1P46531 2555 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 TMEM269A0A1B0GVZ9 245 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 M0R1W7 72 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 PRODHO43272 600 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 TSPAN9O75954 239 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 HMGN1P05114 100 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 CALB2P22676 271 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 MAP2K3P46734 347 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 CAV3P56539 151 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 GNG3P63215 75 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 SNCBQ16143 134 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 OCLNQ16625 522 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 CEACAM21Q3KPI0 293 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 PLCXD3Q63HM9 321 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 PLEKHG7Q6ZR37 379 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 CD177Q8N6Q3 437 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 NPRL2Q8WTW4 380 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 AQP3Q92482 292 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 SSX3Q99909 188 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 PBOV1Q9GZY1 135 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 DNTTIP1Q9H147 329 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 METTL8Q9H825 291 aaKnown RBP9.43□□□□□ -0.9
USP4-204ENST00000416417 ZNF556Q9HAH1 456 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 GPR173Q9NS66 373 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 PIGLQ9Y2B2 252 aa9.43□□□□□ -0.9
USP4-204ENST00000416417 PRKDCP78527 4128 aaKnown RBP9.43□□□□□ -0.9
USP4-204ENST00000416417 ARRDC5A6NEK1 342 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 RFPL4AA6NLU0 287 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 RFPL4AL1F8VTS6 287 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 H3BSH0 61 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 CCL3L1P16619 93 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 COX7A1P24310 79 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 TGFBR2P37173 567 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 BMXP51813 675 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 SNAPC1Q16533 368 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 PLA1AQ53H76 456 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 SLC35D3Q5M8T2 416 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 THAP5Q7Z6K1 395 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 SPATA24Q86W54 205 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 LYG1Q8N1E2 194 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 OR51G2Q8NGK0 314 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 APOL4Q9BPW4 351 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 ABCB9Q9NP78 766 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 IKZF2Q9UKS7 526 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 WNK1Q9H4A3 2382 aa9.42□□□□□ -0.9
USP4-204ENST00000416417 MEGF11A6BM72 1044 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 INMTO95050 263 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 PRB2P02812 416 aaPredicted RBP9.41□□□□□ -0.9
USP4-204ENST00000416417 CSF1P09603 554 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 PIPP12273 146 aaPredicted RBP9.41□□□□□ -0.9
USP4-204ENST00000416417 GABRA5P31644 462 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 CBX1P83916 185 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 RIPPLY1Q0D2K3 151 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 BLMHQ13867 455 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 NCR3LG1Q68D85 454 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 TMEM200BQ69YZ2 307 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 ZNF782Q6ZMW2 699 aaPredicted RBP9.41□□□□□ -0.9
USP4-204ENST00000416417 ACP7Q6ZNF0 438 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 CCDC197Q8NCU1 140 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 BEND2Q8NDZ0 799 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 OR5A2Q8NGI9 324 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 SDSLQ96GA7 329 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 OR8B4Q96RC9 309 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 YIPF3Q9GZM5 350 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 SLC25A19Q9HC21 320 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 SF3B6Q9Y3B4 125 aaKnown RBP9.41□□□□□ -0.9
USP4-204ENST00000416417 A0A0U1RQV5 110 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 AQP12BA6NM10 295 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 G3V4G9 280 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 GSC2O15499 205 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 PRKYO43930 277 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 MITFO75030 526 aaPredicted RBP9.41□□□□□ -0.9
USP4-204ENST00000416417 FKBP6O75344 327 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 MTRF1O75570 445 aaKnown RBP9.41□□□□□ -0.9
USP4-204ENST00000416417 NRASP01111 189 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 TTRP02766 147 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 PRDX2P32119 198 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 HAAOP46952 286 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 RAB13P51153 203 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 CRISP1P54107 249 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 ESRRGP62508 458 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms