RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 TMEM123Q8N131 208 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 SVBPQ8N300 66 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 OR51T1Q8NGJ9 327 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 RXFP4Q8TDU9 374 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 RNF141Q8WVD5 230 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 TMEM54Q969K7 222 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 PIGTQ969N2 578 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 MRPL24Q96A35 216 aaKnown RBP8.61□□□□□ -1.03
SS18-203ENST00000415083 C2orf50Q96LR7 162 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 OXGR1Q96P68 337 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 RFNGQ9Y644 331 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 CRYBA1P05813 215 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 SERPINA2P20848 420 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 ZNF41P51814 821 aaPredicted RBP8.61□□□□□ -1.03
SS18-203ENST00000415083 ZNF133P52736 654 aaPredicted RBP8.61□□□□□ -1.03
SS18-203ENST00000415083 CLDN17P56750 224 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 TAS2R31P59538 309 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 DOK3Q7L591 496 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 COMMD2Q86X83 199 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 OR5H2Q8NGV7 314 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 LYPD6BQ8NI32 183 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 HPSE2Q8WWQ2 592 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 EHFQ9NZC4 300 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 NDRG3Q9UGV2 375 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 AMY2BP19961 511 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 BLVRBP30043 206 aaPredicted RBP8.61□□□□□ -1.03
SS18-203ENST00000415083 RAB13P51153 203 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 RPUSD3Q6P087 351 aaKnown RBP8.61□□□□□ -1.03
SS18-203ENST00000415083 BRICD5Q6PL45 260 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 LRRC18Q8N456 261 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 OR56B1Q8NGI3 324 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 DNASE2BQ8WZ79 361 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 SEC11CQ9BY50 192 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 PARP12Q9H0J9 701 aaKnown RBP8.61□□□□□ -1.03
SS18-203ENST00000415083 RHOFQ9HBH0 211 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 ATPIF1Q9UII2 106 aa8.61□□□□□ -1.03
SS18-203ENST00000415083 COL27A1Q8IZC6 1860 aaPredicted RBP8.61□□□□□ -1.03
SS18-203ENST00000415083 IGKV1-12A0A0C4DH73 117 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 IGHV5-10-1A0A0J9YXX1 117 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 LOC102725191A0A1B0GVB3 256 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 TERTO14746 1132 aaKnown RBP8.6□□□□□ -1.03
SS18-203ENST00000415083 ZIC3O60481 467 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 IGKV1D-12P01611 117 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 OR8U9P0C7N5 309 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 CBX5P45973 191 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 RABEPKQ7Z6M1 372 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 KMT5CQ86Y97 462 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 C20orf196Q8IYI0 205 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 ZNF283Q8N7M2 679 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 OR2AJ1Q8NGZ0 328 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 OR8U1Q8NH10 309 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 SGK3Q96BR1 496 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 Q96M66 194 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 CRB3Q9BUF7 120 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 FOXD3Q9UJU5 478 aaPredicted RBP8.6□□□□□ -1.03
SS18-203ENST00000415083 CFAP47Q6ZTR5 3102 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 ONECUT2O95948 504 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 KNG1P01042 644 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 NME2P22392 152 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 CAV2P51636 162 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 B2MP61769 119 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 CSNK2A1P68400 391 aaPredicted RBP8.6□□□□□ -1.03
SS18-203ENST00000415083 CCL7P80098 99 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 AIMP2Q13155 320 aaKnown RBP8.6□□□□□ -1.03
SS18-203ENST00000415083 NSUN5P2Q63ZY6 315 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 MRPL14Q6P1L8 145 aaKnown RBP8.6□□□□□ -1.03
SS18-203ENST00000415083 DHRS11Q6UWP2 260 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 CSNK2A3Q8NEV1 391 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 SEMA6DQ8NFY4 1073 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 OR5T2Q8NGG2 359 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 OR2AE1Q8NHA4 323 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 PIGQQ9BRB3 760 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 OCIAD1Q9NX40 245 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 NBEAQ8NFP9 2946 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 F5H5K5 113 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 ANGPTL7O43827 346 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 SCRG1O75711 98 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 SCGNO76038 276 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 SERPINA5P05154 406 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 RFC3P40938 356 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 ECH1Q13011 328 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 PDZK1IP1Q13113 114 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 PCOLCEQ15113 449 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 TGIF1Q15583 401 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 CCDC157Q569K6 752 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 C10orf128Q5T292 105 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 RAB11FIP2Q7L804 512 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 CCDC36Q8IYA8 594 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 LILRB1Q8NHL6 650 aaPredicted RBP8.6□□□□□ -1.03
SS18-203ENST00000415083 FGFBP3Q8TAT2 258 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 SLC25A43Q8WUT9 341 aaPredicted RBP8.6□□□□□ -1.03
SS18-203ENST00000415083 SPACA9Q96E40 222 aaPredicted RBP8.6□□□□□ -1.03
SS18-203ENST00000415083 CNTNAP3BQ96NU0 1288 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 GNRHR2Q96P88 292 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 SRXN1Q9BYN0 137 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 CNTNAP3Q9BZ76 1288 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 CHST5Q9GZS9 411 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 METTL7AQ9H8H3 244 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 GSKIPQ9P0R6 139 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 TUBD1Q9UJT1 453 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms