RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ZNF195O14628 629 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 PTP4A3O75365 173 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 ADAP1O75689 374 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 ZNF766Q5HY98 468 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 FAM78BQ5VT40 261 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 PRAMEF20Q5VT98 475 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 AP5S1Q9NUS5 200 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 KLK11Q9UBX7 282 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 A0A1W2PQU0 124 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 COX20Q5RI15 118 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 ADAMTSL4Q6UY14 1074 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 OR5D18Q8NGL1 313 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 ROBO4Q8WZ75 1007 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 OR8B4Q96RC9 309 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 FBXL17Q9UF56 701 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 ZBTB42B2RXF5 422 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 PRAMEF26H0Y7S4 382 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 CDK2AP1O14519 115 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 GYPAP02724 150 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 APCSP02743 223 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 THBS4P35443 961 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 HNRNPA1L2Q32P51 320 aaKnown RBP11.64□□□□□ -0.55
COL6A3-206ENST00000409809 OR5A2Q8NGI9 324 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 OR52B4Q8NGK2 314 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 RAB37Q96AX2 223 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 CDS2O95674 445 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 CGGBP1Q9UFW8 167 aaPredicted RBP11.64□□□□□ -0.55
COL6A3-206ENST00000409809 NDUFB7P17568 137 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 METAP1P53582 386 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 COL9A3Q14050 684 aaPredicted RBP11.64□□□□□ -0.55
COL6A3-206ENST00000409809 CA5BP1Q8WTZ4 195 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 OR2J1Q9GZK6 312 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 TIMM10BQ9Y5J6 103 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 KCPQ6ZWJ8 1503 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 SP1P08047 785 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 SPATA45Q537H7 98 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 METTL27Q8N6F8 245 aaPredicted RBP11.63□□□□□ -0.55
COL6A3-206ENST00000409809 TMEM38BQ9NVV0 291 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 OR4F17Q8NGA8 305 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 CCR2P41597 374 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 ZNF385CQ66K41 422 aaPredicted RBP11.63□□□□□ -0.55
COL6A3-206ENST00000409809 LAIR1Q6GTX8 287 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 SLC25A34Q6PIV7 304 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 PRSS37A4D1T9 235 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 IFITM10A6NMD0 228 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 CEBPDP49716 269 aaPredicted RBP11.63□□□□□ -0.55
COL6A3-206ENST00000409809 PPP1CAP62136 330 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 AESQ08117 197 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 PPP1R1AQ13522 171 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 LRRC18Q8N456 261 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 DOPEY2Q9Y3R5 2298 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 HCRTR1O43613 425 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 RECKO95980 971 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 CDKN2AP42771 156 aaKnown RBP11.63□□□□□ -0.55
COL6A3-206ENST00000409809 TMEM267Q0VDI3 215 aaPredicted RBP11.63□□□□□ -0.55
COL6A3-206ENST00000409809 NUFIP2Q7Z417 695 aaKnown RBP11.63□□□□□ -0.55
COL6A3-206ENST00000409809 SLC25A42Q86VD7 318 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 SLAMF6Q96DU3 332 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 SFXN1Q9H9B4 322 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 ARFGEF1Q9Y6D6 1849 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 ZNF729A6NN14 1252 aaPredicted RBP11.63□□□□□ -0.55
COL6A3-206ENST00000409809 TAPBPO15533 448 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 CTAG2O75638 210 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 CXorf1O96002 111 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 TMEM33P57088 247 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 HOXC5Q00444 222 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 AAED1Q7RTV5 226 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 OR52N5Q8NH56 324 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 VN1R17PQ8TDU5 208 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 PELI1Q96FA3 418 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 AMDHD2Q9Y303 409 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 NRXN3Q9Y4C0 1643 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 TMEM189-UBE2V1I3L0A0 370 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 TMEM136Q6ZRR5 245 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 MED25Q71SY5 747 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 MDGA1Q8NFP4 955 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 FIZ1Q96SL8 496 aa11.63□□□□□ -0.55
COL6A3-206ENST00000409809 NEURL1O76050 574 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 ATF1P18846 271 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 EXOSC7Q15024 291 aaKnown RBP11.62□□□□□ -0.55
COL6A3-206ENST00000409809 ANKRD55Q3KP44 614 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 MORN1Q5T089 497 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 GOT1L1Q8NHS2 421 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-206ENST00000409809 THAP3Q8WTV1 239 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-206ENST00000409809 NAT6Q93015 286 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 CDX2Q99626 313 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-206ENST00000409809 CA3P07451 260 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 ACAA2P42765 397 aaKnown RBP11.62□□□□□ -0.55
COL6A3-206ENST00000409809 KIAA2026Q5HYC2 2103 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 RSRP1Q9BUV0 290 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 CLDND1Q9NY35 253 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 C19orf53Q9UNZ5 99 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-206ENST00000409809 CLDN16Q9Y5I7 305 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 PITX3O75364 302 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 CFIP05156 583 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 PTOV1Q86YD1 416 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 TM4SF18Q96CE8 201 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 SEBOXQ9HB31 216 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-206ENST00000409809 CLEC12BQ2HXU8 276 aa11.62□□□□□ -0.55
COL6A3-206ENST00000409809 OR1P1Q8NH06 330 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms