RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 C11orf54Q9H0W9 315 aaPredicted RBP6.52□□□□□ -1.37
SCN9A-202ENST00000409435 CLN8Q9UBY8 286 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 KNTC1P50748 2209 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 GAGE10A6NGK3 116 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 SH2D1BO14796 132 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 XRCC2O43543 280 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 FOXH1O75593 365 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 HSD17B1P14061 328 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 SRD5A1P18405 259 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 COX7A1P24310 79 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 OR10J1P30954 320 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 ECI1P42126 302 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 PRRX1P54821 245 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 PPP1CBP62140 327 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 HIST3H3Q16695 136 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 SCGB1D4Q6XE38 83 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 NUFIP2Q7Z417 695 aaKnown RBP6.52□□□□□ -1.37
SCN9A-202ENST00000409435 ZNF383Q8NA42 475 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 ZNF680Q8NEM1 530 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 OR2M3Q8NG83 312 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 OIT3Q8WWZ8 545 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 EMC6Q9BV81 110 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 PECRQ9BY49 303 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 RHOFQ9HBH0 211 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 DLEC1Q9Y238 1755 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 NUMA1Q14980 2115 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 A0A1W2PRD5 423 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 A0A1W2PRF3 423 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 A0A1W2PRM7 423 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 ZNF98A6NK75 572 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 SLC25A17O43808 307 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 FURINP09958 794 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 CCL3P10147 92 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 MTCP1P56278 107 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 RAB40BQ12829 278 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 ANAPC16Q96DE5 110 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 SERTM2A0A1B0GWG4 89 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 DBX1A6NMT0 343 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 ACOT8O14734 319 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 GPANK1O95872 356 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 ADRA2AP08913 450 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 C21orf33P30042 268 aaPredicted RBP6.51□□□□□ -1.37
SCN9A-202ENST00000409435 SDHAP31040 664 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 LTBQ06643 244 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 ACSM3Q53FZ2 586 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 CLLU1Q5K131 121 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 RNLSQ5VYX0 342 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 TMEM182Q6ZP80 229 aaPredicted RBP6.51□□□□□ -1.37
SCN9A-202ENST00000409435 Q6ZRG5 221 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 TFAP2CQ92754 450 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 SLCO4A1Q96BD0 722 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 SMIM7Q9BQ49 75 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 TMEM191AQ9H0A3 160 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 HRASLSQ9HDD0 168 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 HINT3Q9NQE9 182 aaKnown RBP6.51□□□□□ -1.37
SCN9A-202ENST00000409435 A3GALT2U3KPV4 340 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 TRAV27A0A087WT01 109 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 TRGV10A0A0A0MS01 117 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 OOEPA6NGQ2 149 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 ALG1L2C9J202 215 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 CTDSP2O14595 271 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 ALDOCP09972 364 aaKnown RBP6.51□□□□□ -1.37
SCN9A-202ENST00000409435 TBPP20226 339 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 RFX2P48378 723 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 PIGPP57054 158 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 RPS16P62249 146 aaKnown RBP6.51□□□□□ -1.37
SCN9A-202ENST00000409435 EMX1Q04741 257 aaPredicted RBP6.51□□□□□ -1.37
SCN9A-202ENST00000409435 MESP2Q0VG99 397 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 FOXO1Q12778 655 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 CATR1Q13166 79 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 CTU2Q2VPK5 515 aaKnown RBP6.51□□□□□ -1.37
SCN9A-202ENST00000409435 DEFB121Q5J5C9 76 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 ACOT7LQ6ZUV0 252 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 FAM214BQ7L5A3 538 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 FEVQ99581 238 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 CITED2Q99967 270 aaPredicted RBP6.51□□□□□ -1.37
SCN9A-202ENST00000409435 ABHD6Q9BV23 337 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 TMEM231Q9H6L2 316 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 INPP5EQ9NRR6 644 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 ACER3Q9NUN7 267 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 FAM206AQ9NX38 181 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 FAM53CQ9NYF3 392 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 SSUH2Q9Y2M2 353 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 GABARAPH6UMI1 98 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 RHBDL1O75783 438 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 GABARAPO95166 117 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 ERVFRD-1P60508 538 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 SYPL1Q16563 259 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 RPUSD3Q6P087 351 aaKnown RBP6.51□□□□□ -1.37
SCN9A-202ENST00000409435 C20orf204Q6ZNR8 217 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 TUSC5Q8IXB3 177 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 CMBLQ96DG6 245 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 OR10C1Q96KK4 312 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 DMRTA2Q96SC8 542 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 OR2D2Q9H210 308 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 DLL4Q9NR61 685 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 ZNF391Q9UJN7 358 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 CDCP2Q5VXM1 449 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 FAM166AQ6J272 317 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 LSRQ86X29 649 aaPredicted RBP6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms