RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 C2orf68Q2NKX9 166 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 DCAF12L2Q5VW00 463 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 LPCAT3Q6P1A2 487 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 GJC3Q8NFK1 279 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 STARD10Q9Y365 291 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 BDP1A6H8Y1 2624 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 A0A1B0GW55 424 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 H7C1Q1 480 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 RAMP1O60894 148 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 UBBP0CG47 229 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 DUX4L2P0CJ85 424 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 DUX4L3P0CJ86 424 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 DUX4L4P0CJ87 422 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 DUX4L5P0CJ88 424 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 DUX4L6P0CJ89 424 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 DUX4L7P0CJ90 424 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 GNB3P16520 340 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 ECH1Q13011 328 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 ZNF239Q16600 458 aaKnown RBP8.49□□□□□ -1.05
COL6A3-204ENST00000392003 NHLRC3Q5JS37 347 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 GSG1LQ6UXU4 331 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 ZDHHC22Q8N966 263 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 OR2Y1Q8NGV0 311 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 WDR89Q96FK6 387 aaPredicted RBP8.49□□□□□ -1.05
COL6A3-204ENST00000392003 GNRHR2Q96P88 292 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 RBM24Q9BX46 236 aaKnown RBP8.49□□□□□ -1.05
COL6A3-204ENST00000392003 TMEM59Q9BXS4 323 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 ANGPTL4Q9BY76 406 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 DUX4Q9UBX2 424 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 KIF25Q9UIL4 384 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 ADAMTS9Q9P2N4 1935 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 A0A087X0M5 115 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 A0A1B0GX30 115 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 GJE1A6NN92 205 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 F5H5K5 113 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 NTN3O00634 580 aaPredicted RBP8.49□□□□□ -1.05
COL6A3-204ENST00000392003 UBE2CO00762 179 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 CIDEAO60543 219 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 GSTP1P09211 210 aaKnown RBP8.49□□□□□ -1.05
COL6A3-204ENST00000392003 LIPCP11150 499 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 DHRS2Q13268 280 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 UNC119Q13432 240 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 ARFRP1Q13795 201 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 SMCO1Q147U7 214 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 PYY3Q5JQD4 70 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 AVPI1Q5T686 147 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 ETV3LQ6ZN32 361 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 LYPD6Q86Y78 171 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 PAQR4Q8N4S7 273 aaPredicted RBP8.49□□□□□ -1.05
COL6A3-204ENST00000392003 DMBX1Q8NFW5 382 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 RAB3CQ96E17 227 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 NUDT16L1Q9BRJ7 211 aaKnown RBP8.49□□□□□ -1.05
COL6A3-204ENST00000392003 PRDM13Q9H4Q3 707 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 FBLN5Q9UBX5 448 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 MED12Q93074 2177 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 EREGO14944 169 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 SMAD9O15198 467 aaKnown RBP8.49□□□□□ -1.05
COL6A3-204ENST00000392003 CRTAPO75718 401 aaPredicted RBP8.49□□□□□ -1.05
COL6A3-204ENST00000392003 DKK1O94907 266 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 IGHEP01854 428 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 ZNF735P0CB33 412 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 CCL3P10147 92 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 LIFP15018 202 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 RPS18P62269 152 aaKnown RBP8.49□□□□□ -1.05
COL6A3-204ENST00000392003 ZFP36L1Q07352 338 aaKnown RBP8.49□□□□□ -1.05
COL6A3-204ENST00000392003 B3GNTL1Q67FW5 361 aaPredicted RBP8.49□□□□□ -1.05
COL6A3-204ENST00000392003 C6orf15Q6UXA7 325 aaPredicted RBP8.49□□□□□ -1.05
COL6A3-204ENST00000392003 ZNF546Q86UE3 836 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 PUSL1Q8N0Z8 303 aaKnown RBP8.49□□□□□ -1.05
COL6A3-204ENST00000392003 GVQW1Q8N7I0 195 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 OR56B1Q8NGI3 324 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 SCARB1Q8WTV0 552 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 IMMP1LQ96LU5 166 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 PHB2Q99623 299 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 CST11Q9H112 138 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 SLC2A8Q9NY64 477 aa8.49□□□□□ -1.05
COL6A3-204ENST00000392003 VCANP13611 3396 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 TMEM14DPA8MWL7 114 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 SLC34A2O95436 690 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 COX6A1P12074 109 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 HRH1P35367 487 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 PPT1P50897 306 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 IL13RA1P78552 427 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 GUCA2BQ16661 112 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 RNF212Q495C1 297 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 ACTBL2Q562R1 376 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 DMRTA1Q5VZB9 504 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 OR52W1Q6IF63 320 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 LYG2Q86SG7 212 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 OR4K15Q8NH41 348 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 ULBP2Q9BZM5 246 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 NELFAQ9H3P2 528 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 GOLT1BQ9Y3E0 138 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 LNP1A1A4G5 178 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 DHHO43323 396 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 P04436 131 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 UMODP07911 640 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 NQO2P16083 231 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 DDTP30046 118 aa8.48□□□□□ -1.05
COL6A3-204ENST00000392003 CD96P40200 585 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms