RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 KRASP01116 189 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 ZNF260Q3ZCT1 412 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 WDR89Q96FK6 387 aaPredicted RBP11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 MYH14Q7Z406 1995 aaKnown RBP11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 TOGARAM1Q9Y4F4 1720 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 OR2T8A6NH00 312 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 OR5AL1P0C617 328 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 HIST1H3AP68431 136 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 KIRREL2Q6UWL6 708 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 PRSS3P2Q8NHM4 247 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 PCED1AQ9H1Q7 454 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 SLC25A1P53007 311 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 CEBPEQ15744 281 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 AANATQ16613 207 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 TMEM183BQ1AE95 376 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 MIDNQ504T8 468 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 CXorf67Q86X51 503 aaPredicted RBP11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 SLC26A1Q9H2B4 701 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 SLC38A11Q08AI6 406 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 RIMKLAQ8IXN7 391 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 LYG1Q8N1E2 194 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 LILRB1Q8NHL6 650 aaPredicted RBP11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 TOLLIPQ9H0E2 274 aa11.47□□□□□ -0.57
CCDC88C-204ENST00000389857 SDK1Q7Z5N4 2213 aa11.46□□□□□ -0.57
CCDC88C-204ENST00000389857 SOCS7O14512 581 aa11.46□□□□□ -0.57
CCDC88C-204ENST00000389857 GATCO43716 136 aaKnown RBP11.46□□□□□ -0.57
CCDC88C-204ENST00000389857 HTR1DP28221 377 aa11.46□□□□□ -0.57
CCDC88C-204ENST00000389857 TMEM108Q6UXF1 575 aa11.46□□□□□ -0.57
CCDC88C-204ENST00000389857 ZBTB44Q8NCP5 570 aa11.46□□□□□ -0.57
CCDC88C-204ENST00000389857 SPNS1Q9H2V7 528 aa11.46□□□□□ -0.57
CCDC88C-204ENST00000389857 FCGR3BO75015 233 aa11.46□□□□□ -0.57
CCDC88C-204ENST00000389857 NEURL1O76050 574 aa11.46□□□□□ -0.57
CCDC88C-204ENST00000389857 CD200P41217 278 aa11.46□□□□□ -0.57
CCDC88C-204ENST00000389857 ZNF788Q6ZQV5 615 aa11.46□□□□□ -0.57
CCDC88C-204ENST00000389857 SLC16A12Q6ZSM3 486 aa11.46□□□□□ -0.57
CCDC88C-204ENST00000389857 CXCL16Q9H2A7 254 aa11.46□□□□□ -0.57
CCDC88C-204ENST00000389857 K7ESF4 209 aa11.46□□□□□ -0.57
CCDC88C-204ENST00000389857 CST7O76096 145 aa11.46□□□□□ -0.57
CCDC88C-204ENST00000389857 HLA-BQ31612 363 aa11.46□□□□□ -0.57
CCDC88C-204ENST00000389857 NAT8BQ9UHF3 227 aa11.46□□□□□ -0.57
CCDC88C-204ENST00000389857 H3BP45 60 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 ADAM20O43506 726 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 WDR73Q6P4I2 378 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 NUFIP2Q7Z417 695 aaKnown RBP11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 RNF2Q99496 336 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 C12orf57Q99622 126 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 MTCH2Q9Y6C9 303 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 BTAF1O14981 1849 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 FAM24AA6NFZ4 105 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 DHRS3O75911 302 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 CEACAM5P06731 702 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 CST9Q5W186 159 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 FDX2Q6P4F2 183 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 GLDNQ6ZMI3 551 aaPredicted RBP11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 BLNKQ8WV28 456 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 GSX1Q9H4S2 264 aaPredicted RBP11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 ZNF768Q9H5H4 540 aaKnown RBP11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 NARFLQ9H6Q4 476 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 hADV38S2A0JD32 116 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 ONECUT2O95948 504 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 CST4P01036 141 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 PET117Q6UWS5 81 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 DOLPP1Q86YN1 238 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 ZNF680Q8NEM1 530 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 LRRC61Q9BV99 259 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 WSB2Q9NYS7 404 aaPredicted RBP11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 ING1Q9UK53 422 aaPredicted RBP11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 NPTNQ9Y639 398 aa11.46□□□□□ -0.58
CCDC88C-204ENST00000389857 A0A1B0GTQ1 180 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 LIMK1P53667 647 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 COL13A1Q5TAT6 717 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 FNDC7Q5VTL7 733 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 KIAA1958Q8N8K9 716 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 OR5R1Q8NH85 324 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 MASP2O00187 686 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 BMPR1BO00238 502 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 TNFAIP6P98066 277 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 MAMSTRQ6ZN01 415 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 RPS27P42677 84 aaKnown RBP11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 TMEM241Q24JQ0 296 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 RTN4RL1Q86UN2 441 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 MAFAQ8NHW3 353 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 IL36GQ9NZH8 169 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 C2CD4DB7Z1M9 353 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 LGALS7P47929 136 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 KLF3P57682 345 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 SLC25A35Q3KQZ1 300 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 B3GNTL1Q67FW5 361 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 TCTEX1D1Q8N7M0 179 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 NUDT8Q8WV74 236 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 AP5S1Q9NUS5 200 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 LPAR6P43657 344 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 HLXQ14774 488 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 GUK1Q16774 197 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 SPNS3Q6ZMD2 512 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 DUSP21Q9H596 190 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 SH2D2AQ9NP31 389 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 C3orf85A0A1B0GTC6 90 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms