RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 LYPD6Q86Y78 171 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 C7orf61Q8IZ16 206 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 FAM71E2Q8N5Q1 922 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 CSNK2A3Q8NEV1 391 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 OR9K2Q8NGE7 335 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 OR52M1Q8NGK5 317 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 OR10S1Q8NGN2 331 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 OR11L1Q8NGX0 322 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 BMFQ96LC9 184 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 DGAT2Q96PD7 388 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 SSX3Q99909 188 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 TIMM29Q9BSF4 260 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 MRI1Q9BV20 369 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 TMPRSS5Q9H3S3 457 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 PISDQ9UG56 409 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 VDAC3Q9Y277 283 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 ASXL3Q9C0F0 2248 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 DHRS7CA6NNS2 312 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 GPR89AB7ZAQ6 455 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 GEMIN2O14893 280 aaKnown RBP4.77□□□□□ -1.65
ATG4A-204ENST00000372246 CYB5BO43169 146 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 ZNF264O43296 627 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 SYT7O43581 403 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 SRSF10O75494 262 aaKnown RBP4.77□□□□□ -1.65
ATG4A-204ENST00000372246 ONECUT2O95948 504 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 GPR89BP0CG08 455 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 HLA-GP17693 338 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 ZNF93P35789 620 aaPredicted RBP4.77□□□□□ -1.65
ATG4A-204ENST00000372246 APOBEC1P41238 236 aaKnown RBP4.77□□□□□ -1.65
ATG4A-204ENST00000372246 RPP30P78346 268 aaKnown RBP4.77□□□□□ -1.65
ATG4A-204ENST00000372246 RUNX1Q01196 453 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 KHDC3LQ587J8 217 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 NSUN5P2Q63ZY6 315 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 CNKSR3Q6P9H4 555 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 OGFOD3Q6PK18 319 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 LYZL2Q7Z4W2 148 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 ABHD12BQ7Z5M8 362 aaPredicted RBP4.77□□□□□ -1.65
ATG4A-204ENST00000372246 TGIF2LXQ8IUE1 241 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 DEFB119Q8N690 84 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 OR14K1Q8NGZ2 314 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 OR52N5Q8NH56 324 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 BAHD1Q8TBE0 780 aaPredicted RBP4.77□□□□□ -1.65
ATG4A-204ENST00000372246 RAB3CQ96E17 227 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 AQP10Q96PS8 301 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 GPX7Q96SL4 187 aaPredicted RBP4.77□□□□□ -1.65
ATG4A-204ENST00000372246 GPER1Q99527 375 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 RAB11FIP5Q9BXF6 653 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 NMES1Q9C002 83 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 MAGT1Q9H0U3 335 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 RNF208Q9H0X6 261 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.77□□□□□ -1.65
ATG4A-204ENST00000372246 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.77□□□□□ -1.65
ATG4A-204ENST00000372246 PLA2G3Q9NZ20 509 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 MRPS28Q9Y2Q9 187 aaKnown RBP4.77□□□□□ -1.65
ATG4A-204ENST00000372246 HDGFL3Q9Y3E1 203 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 WIF1Q9Y5W5 379 aa4.77□□□□□ -1.65
ATG4A-204ENST00000372246 ZNF878C9JN71 531 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 SCDO00767 359 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 PHOX2AO14813 284 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 HIST1H2BKO60814 126 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 CBR3O75828 277 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 PTBP3O95758 552 aaKnown RBP4.76□□□□□ -1.65
ATG4A-204ENST00000372246 MBPP02686 304 aaPredicted RBP4.76□□□□□ -1.65
ATG4A-204ENST00000372246 OPN1MWP04001 364 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 HIST1H2BJP06899 126 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 HCKP08631 526 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 H2BFMP0C1H6 154 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 OPN1MW2P0DN77 364 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 OPN1MW3P0DN78 364 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 CD37P11049 281 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 EDN3P14138 238 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 HIST1H2BOP23527 126 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 GABRR1P24046 479 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 HIST1H2BBP33778 126 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 OR3A2P47893 321 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 RGS19P49795 217 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 SLC37A1P57057 533 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 HIST1H2BDP58876 126 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 RPL27P61353 136 aaKnown RBP4.76□□□□□ -1.65
ATG4A-204ENST00000372246 HNRNPKP61978 463 aaKnown RBP eCLIP4.76□□□□□ -1.65
ATG4A-204ENST00000372246 HIST1H2BCP62807 126 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 POU3F1Q03052 451 aaPredicted RBP4.76□□□□□ -1.65
ATG4A-204ENST00000372246 USF2Q15853 346 aaPredicted RBP4.76□□□□□ -1.65
ATG4A-204ENST00000372246 HIST2H2BEQ16778 126 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 RNF212Q495C1 297 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 C14orf28Q4W4Y0 310 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.76□□□□□ -1.65
ATG4A-204ENST00000372246 SAPCD1Q5SSQ6 148 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 FAM69BQ5VUD6 431 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 GGNBP1Q5YKI7 109 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 RPUSD3Q6P087 351 aaKnown RBP4.76□□□□□ -1.65
ATG4A-204ENST00000372246 HEPN1Q6WQI6 88 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.76□□□□□ -1.65
ATG4A-204ENST00000372246 TMEM217Q8N7C4 229 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 ZDHHC22Q8N966 263 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 OR5H2Q8NGV7 314 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 MFSD8Q8NHS3 518 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 SLC37A2Q8TED4 501 aa4.76□□□□□ -1.65
ATG4A-204ENST00000372246 DAZLQ92904 295 aaKnown RBP4.76□□□□□ -1.65
ATG4A-204ENST00000372246 HIST1H2BHQ93079 126 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms