RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 TLNRD1Q9H1K6 362 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 ABCB9Q9NP78 766 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 YAE1D1Q9NRH1 226 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 RNF7Q9UBF6 113 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 MTORP42345 2549 aa12.65□□□□□ -0.38
SMPDL3A-201ENST00000368440 hCG_1807616A0A1W2PRN6 198 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 DHRS7CA6NNS2 312 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 NRASP01111 189 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 ISG15P05161 165 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 IRF2P14316 349 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 TGFBR1P36897 503 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 GBX2P52951 348 aaPredicted RBP12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 TMBIM6P55061 237 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 CEACAM21Q3KPI0 293 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 CLVS2Q5SYC1 327 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 TMEM244Q5VVB8 128 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 LIPKQ5VXJ0 399 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 WDR82Q6UXN9 313 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 C1orf87Q8N0U7 546 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 GCSAMQ8N6F7 178 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 MYCBPQ99417 103 aaPredicted RBP12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 PDCD1LG2Q9BQ51 273 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 PLEKHA1Q9HB21 404 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 LPAR2Q9HBW0 351 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 TMEM165Q9HC07 324 aa12.64□□□□□ -0.39
SMPDL3A-201ENST00000368440 PPIAL4EA0A075B759 164 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 LOC100506127A0A0U1RQW1 187 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 ZNF732B4DXR9 585 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 INAFM1C9JVW0 142 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 PPIAL4DF5H284 164 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 CDIPTO14735 213 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 ZFPL1O95159 310 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 PPIAL4FP0DN26 164 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 MDH2P40926 338 aaKnown RBP12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 VBP1P61758 197 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 SSX1Q16384 188 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 FAM76BQ5HYJ3 339 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 RNLSQ5VYX0 342 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 SFRP4Q6FHJ7 346 aaPredicted RBP12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 ANKRD13BQ86YJ7 626 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 EGFL6Q8IUX8 553 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 ZNF676Q8N7Q3 588 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 SCCPDHQ8NBX0 429 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 ZNF485Q8NCK3 441 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 DEFB108BQ8NET1 73 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 RAB2BQ8WUD1 216 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 ADAT3Q96EY9 351 aaPredicted RBP12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 HIST1H2AAQ96QV6 131 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 TMEM246Q9BRR3 403 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 PPIAL4AQ9Y536 164 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 SIRT4Q9Y6E7 314 aaPredicted RBP12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 TMEM210A6NLX4 147 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 CEACAM18A8MTB9 384 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 TGFAP01135 160 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 TGM4P49221 684 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 SEC61A1P61619 476 aaKnown RBP12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 ZNF404Q494X3 552 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 TMEM155Q4W5P6 130 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 TMPRSS11AQ6ZMR5 421 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 LINC01356Q8N9X3 169 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 OR5A2Q8NGI9 324 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 NPRL2Q8WTW4 380 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 LRRC29Q8WV35 223 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 TMEM203Q969S6 136 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 CHCHD6Q9BRQ6 235 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 OR51E2Q9H255 320 aa12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.63□□□□□ -0.39
SMPDL3A-201ENST00000368440 ANK3Q12955 4377 aaKnown RBP12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 ANKRD61A6NGH8 418 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 CCRL2O00421 344 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 AIREO43918 545 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 LHBP01229 141 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 NCS1P62166 190 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 GNG3P63215 75 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 MRPL28Q13084 256 aaKnown RBP12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 SPCS2Q15005 226 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 UBE2V2Q15819 145 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 CTF1Q16619 201 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 SPICQ8N5J4 248 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 OR52N1Q8NH53 320 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 RPS4Y2Q8TD47 263 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 RGP1Q92546 391 aaPredicted RBP12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 RAB39BQ96DA2 213 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 SEH1LQ96EE3 360 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 OR51I2Q9H344 312 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 RNF167Q9H6Y7 350 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 PATZ1Q9HBE1 687 aaKnown RBP12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 HHLA2Q9UM44 414 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 NF1P21359 2839 aa12.62□□□□□ -0.39
SMPDL3A-201ENST00000368440 IGHV3OR15-7A0A075B7D8 119 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 TRBV2A0A0J9YWF9 115 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 OR5B21A6NL26 309 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 F5H0A9 414 aaPredicted RBP12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 RHBDL1O75783 438 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 GABARAPO95166 117 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 MLLT11Q13015 90 aaPredicted RBP12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 CDK5R1Q15078 307 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 FAM166AQ6J272 317 aa12.61□□□□□ -0.39
SMPDL3A-201ENST00000368440 LYPD2Q6UXB3 125 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms