RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 A8MVM7 634 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 UMAD1C9J7I0 102 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 ZNF587BE7ETH6 402 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 BHLHE40O14503 412 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 TGOLN2O43493 480 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 EFNA2O43921 213 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 HIST1H2BKO60814 126 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 RAMP1O60894 148 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 C1QL1O75973 258 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 P04436 131 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 HIST1H2BJP06899 126 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 CXCL1P09341 107 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 HIST1H2BOP23527 126 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 HIST1H2BBP33778 126 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 ZNF41P51814 821 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-203ENST00000354674 HIST1H2BDP58876 126 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 RAB4BP61018 213 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 HIST1H2BCP62807 126 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 FOXO1Q12778 655 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 FOXF1Q12946 379 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 HIST2H2BEQ16778 126 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 UBE2NLQ5JXB2 153 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-203ENST00000354674 C10orf91Q5T1B1 145 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 SNIP1Q8TAD8 396 aaKnown RBP8.9□□□□□ -0.98
SYNE1-203ENST00000354674 HIST1H2BHQ93079 126 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 TAAR8Q969N4 342 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 ZBTB8AQ96BR9 441 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 KTI12Q96EK9 354 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-203ENST00000354674 HIST1H2BNQ99877 126 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 HIST1H2BMQ99879 126 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 ANKRD10Q9NXR5 420 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 ABI3Q9P2A4 366 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 GNG8Q9UK08 70 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 ZMIZ1Q9ULJ6 1067 aa8.9□□□□□ -0.98
SYNE1-203ENST00000354674 TRAV36DV7A0A075B6V5 113 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 TRBV2A0A0J9YWF9 115 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 HSPA12AO43301 675 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 TLX3O43711 291 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-203ENST00000354674 MT-ND5P03915 603 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 AMY2AP04746 511 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 SAGP10523 405 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-203ENST00000354674 CEACAM8P31997 349 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-203ENST00000354674 SERPINF1P36955 418 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 CAV2P51636 162 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 UCP3P55916 312 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 DSCR4P56555 118 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-203ENST00000354674 RAP1AP62834 184 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 OR5I1Q13606 314 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 SLC35D3Q5M8T2 416 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 HACD4Q5VWC8 232 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 MDS2Q8NDY4 140 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 OR6X1Q8NH79 312 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 TNFRSF13CQ96RJ3 184 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 GPX7Q96SL4 187 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-203ENST00000354674 UTP23Q9BRU9 249 aaKnown RBP8.89□□□□□ -0.99
SYNE1-203ENST00000354674 EGLN1Q9GZT9 426 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 UBQLN3Q9H347 655 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 DEPPQ9NTK1 212 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 GSKIPQ9P0R6 139 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 LRFN1Q9P244 771 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 MRPS18CQ9Y3D5 142 aaKnown RBP8.89□□□□□ -0.99
SYNE1-203ENST00000354674 EML6Q6ZMW3 1958 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 A0A0G2JMM0 328 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 A0A1W2PPB8 328 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 A0A1W2PRS3 328 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 LRRC3CA6NJW4 275 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 KIR3DP1A8MWS1 328 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 CBR3O75828 277 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 CEACAM4O75871 244 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 OR2F2O95006 317 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 IL5P05113 134 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 EFNB2P52799 333 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 MFAP5Q13361 173 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 OR2F1Q13607 317 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 PGGHGQ32M88 737 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 MESTQ5EB52 335 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 IGFL2Q6UWQ7 119 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 THSD4Q6ZMP0 1018 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 Q6ZRG5 221 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 PXKQ7Z7A4 578 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 OR2T33Q8NG76 320 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 OR4S1Q8NGB4 309 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 OR4K17Q8NGC6 315 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 NEK7Q8TDX7 302 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 NUDCD2Q8WVJ2 157 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 ZMYND19Q96E35 227 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-203ENST00000354674 PIK3IP1Q96FE7 263 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 SIGLEC12Q96PQ1 595 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 NDUFAF3Q9BU61 184 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 ZNF552Q9H707 407 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-203ENST00000354674 DKK4Q9UBT3 224 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 HIF3AQ9Y2N7 669 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 CNOT1A5YKK6 2376 aaKnown RBP8.89□□□□□ -0.99
SYNE1-203ENST00000354674 ZFHX4Q86UP3 3567 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 TRAV27A0A087WT01 109 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 AQP7O14520 342 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 SURF4O15260 269 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 SIAH2O43255 324 aa8.89□□□□□ -0.99
SYNE1-203ENST00000354674 ZIC3O60481 467 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms