RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 HSPB2Q16082 182 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 OR5AS1Q8N127 324 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 OR6S1Q8NH40 331 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 GPX8Q8TED1 209 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 SPTSSAQ969W0 71 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 FOXB1Q99853 325 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 USB1Q9BQ65 265 aaKnown RBP12.16□□□□□ -0.46
TRIM4-201ENST00000349062 BOKQ9UMX3 212 aaPredicted RBP12.16□□□□□ -0.46
TRIM4-201ENST00000349062 DMXL2Q8TDJ6 3036 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 B3GALNT1O75752 331 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 KNG1P01042 644 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 PGAM2P15259 253 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 ZNF17P17021 662 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 CSRP1P21291 193 aaKnown RBP12.16□□□□□ -0.46
TRIM4-201ENST00000349062 SLC9A3R2Q15599 337 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 C6orf201Q7Z4U5 140 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 GCNT2Q8N0V5 402 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 NKAIN3Q8N8D7 197 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 MARCH1Q8TCQ1 289 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 TAS2R8Q9NYW2 309 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 LUZP4Q9P127 313 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 UPB1Q9UBR1 384 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 AKAP13Q12802 2813 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 F8W036 122 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 NKX2-8O15522 239 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 ISG15P05161 165 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 OR3A2P47893 321 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 BLOC1S1P78537 153 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 HGFACQ04756 655 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 PCK2Q16822 640 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 GGNQ86UU5 652 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 STEAP2Q8NFT2 490 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 OR2M7Q8NG81 312 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 REEP6Q96HR9 211 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 TMPRSS13Q9BYE2 586 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 PRELID3BQ9Y3B1 194 aa12.16□□□□□ -0.46
TRIM4-201ENST00000349062 FARS2O95363 451 aaKnown RBP12.15□□□□□ -0.46
TRIM4-201ENST00000349062 CSTBP04080 98 aaKnown RBP12.15□□□□□ -0.46
TRIM4-201ENST00000349062 AMY2BP19961 511 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 ACKR3P25106 362 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 DOK3Q7L591 496 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 OR4K15Q8NH41 348 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 C15orf40Q8WUR7 153 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 VRK1Q99986 396 aaPredicted RBP12.15□□□□□ -0.46
TRIM4-201ENST00000349062 ZNF629Q9UEG4 869 aaPredicted RBP12.15□□□□□ -0.46
TRIM4-201ENST00000349062 EDARQ9UNE0 448 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 OR14I1A6ND48 311 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 C5orf51A6NDU8 294 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 NEURL1O76050 574 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 VAMP5O95183 116 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 ZNF806P0C7X5 589 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 B3GALT5-AS1P59052 145 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 GRB2P62993 217 aaKnown RBP12.15□□□□□ -0.46
TRIM4-201ENST00000349062 GUCA2BQ16661 112 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 SPATA46Q5T0L3 261 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 PEAR1Q5VY43 1037 aaPredicted RBP12.15□□□□□ -0.46
TRIM4-201ENST00000349062 TMEM17Q86X19 198 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 SKA3Q8IX90 412 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 TMEM123Q8N131 208 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 C12orf45Q8N5I9 185 aaPredicted RBP12.15□□□□□ -0.46
TRIM4-201ENST00000349062 OR10R2Q8NGX6 335 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 WDR13Q9H1Z4 485 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 OR2S2Q9NQN1 319 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 ABI3Q9P2A4 366 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 PCDHGA1Q9Y5H4 931 aa12.15□□□□□ -0.46
TRIM4-201ENST00000349062 A0A0A6YYD4 124 aa12.15□□□□□ -0.47
TRIM4-201ENST00000349062 AGPAT2O15120 278 aa12.15□□□□□ -0.47
TRIM4-201ENST00000349062 OR2A4O95047 310 aa12.15□□□□□ -0.47
TRIM4-201ENST00000349062 ONECUT2O95948 504 aa12.15□□□□□ -0.47
TRIM4-201ENST00000349062 OR4E1P0C645 316 aa12.15□□□□□ -0.47
TRIM4-201ENST00000349062 CPN1P15169 458 aa12.15□□□□□ -0.47
TRIM4-201ENST00000349062 MGMTP16455 207 aa12.15□□□□□ -0.47
TRIM4-201ENST00000349062 RRADP55042 308 aa12.15□□□□□ -0.47
TRIM4-201ENST00000349062 FAM166AQ6J272 317 aa12.15□□□□□ -0.47
TRIM4-201ENST00000349062 ZNF100Q8IYN0 542 aa12.15□□□□□ -0.47
TRIM4-201ENST00000349062 ADAD2Q8NCV1 583 aaKnown RBP12.15□□□□□ -0.47
TRIM4-201ENST00000349062 OR1S2Q8NGQ3 325 aa12.15□□□□□ -0.47
TRIM4-201ENST00000349062 SGK3Q96BR1 496 aa12.15□□□□□ -0.47
TRIM4-201ENST00000349062 CMTM3Q96MX0 182 aa12.15□□□□□ -0.47
TRIM4-201ENST00000349062 OR2A7Q96R45 310 aa12.15□□□□□ -0.47
TRIM4-201ENST00000349062 CMSS1Q9BQ75 279 aaKnown RBP12.15□□□□□ -0.47
TRIM4-201ENST00000349062 FANCFQ9NPI8 374 aa12.15□□□□□ -0.47
TRIM4-201ENST00000349062 SLC7A10Q9NS82 523 aa12.15□□□□□ -0.47
TRIM4-201ENST00000349062 SHANK1Q9Y566 2161 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 TUBAL3A6NHL2 446 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 ERCC1P07992 297 aaPredicted RBP12.14□□□□□ -0.47
TRIM4-201ENST00000349062 DUSP1P28562 367 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 PPIAP62937 165 aaKnown RBP12.14□□□□□ -0.47
TRIM4-201ENST00000349062 ARF1P84077 181 aaKnown RBP12.14□□□□□ -0.47
TRIM4-201ENST00000349062 RSPO1Q2MKA7 263 aaPredicted RBP12.14□□□□□ -0.47
TRIM4-201ENST00000349062 PLAC9Q5JTB6 97 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 MOB3CQ70IA8 216 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 HSD17B13Q7Z5P4 300 aaPredicted RBP12.14□□□□□ -0.47
TRIM4-201ENST00000349062 CSNK2A3Q8NEV1 391 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 THAP6Q8TBB0 222 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 RNF138Q8WVD3 245 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 DNTTIP1Q9H147 329 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 OR10A2Q9H208 303 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 COL5A1P20908 1838 aaPredicted RBP12.14□□□□□ -0.47
TRIM4-201ENST00000349062 OR5H14A6NHG9 310 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms