RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 WASF3Q9UPY6 502 aa5.98□□□□□ -1.45
VPS39-202ENST00000348544 C14orf166Q9Y224 244 aaKnown RBP5.98□□□□□ -1.45
VPS39-202ENST00000348544 CHD7Q9P2D1 2997 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 RBFOX3A6NFN3 312 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 CRYM-AS1A6NIL9 109 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 FOXI3A8MTJ6 420 aaPredicted RBP5.97□□□□□ -1.45
VPS39-202ENST00000348544 CDRT15L2A8MXV6 281 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 E5RGE8 158 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 PLPP3O14495 311 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 EREGO14944 169 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 NPIPB7O75200 414 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 CRTAPO75718 401 aaPredicted RBP5.97□□□□□ -1.45
VPS39-202ENST00000348544 IL33O95760 270 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 IL18BPO95998 194 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 IGHMP01871 453 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 HPNP05981 417 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 ZNF823P16415 610 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 TM4SF4P48230 202 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 CD81P60033 236 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 LBHQ53QV2 105 aaPredicted RBP5.97□□□□□ -1.45
VPS39-202ENST00000348544 CYB561D1Q8N8Q1 229 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 LFNGQ8NES3 379 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 OR5D14Q8NGL3 314 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 OR5R1Q8NH85 324 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 KCNG3Q8TAE7 436 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 M1APQ8TC57 530 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 OR51E1Q8TCB6 317 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 DAZLQ92904 295 aaKnown RBP5.97□□□□□ -1.45
VPS39-202ENST00000348544 POM121Q96HA1 1249 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 SHDQ96IW2 340 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 C5orf34Q96MH7 638 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 ADOQ96SZ5 270 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 LIME1Q9H400 295 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 C8orf33Q9H7E9 229 aaPredicted RBP5.97□□□□□ -1.45
VPS39-202ENST00000348544 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.97□□□□□ -1.45
VPS39-202ENST00000348544 PRTFDC1Q9NRG1 225 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 FOXD3Q9UJU5 478 aaPredicted RBP5.97□□□□□ -1.45
VPS39-202ENST00000348544 NSG2Q9Y328 171 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 MRPS23Q9Y3D9 190 aaKnown RBP5.97□□□□□ -1.45
VPS39-202ENST00000348544 LTBP2Q14767 1821 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 VCANP13611 3396 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 C9J4A7 227 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 MSTNO14793 375 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 HCRTR2O43614 444 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 GPR137BO60478 399 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 OR5H8P0DN80 308 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 RNH1P13489 461 aaKnown RBP5.97□□□□□ -1.45
VPS39-202ENST00000348544 GLIPR1P48060 266 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 AFF3P51826 1226 aaKnown RBP5.97□□□□□ -1.45
VPS39-202ENST00000348544 TAS2R46P59540 309 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 NUTF2P61970 127 aaKnown RBP5.97□□□□□ -1.45
VPS39-202ENST00000348544 SP6Q3SY56 376 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 TMEM176BQ3YBM2 270 aaPredicted RBP5.97□□□□□ -1.45
VPS39-202ENST00000348544 C4orf17Q53FE4 359 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 HIST2H3PS2Q5TEC6 136 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 SP5Q6BEB4 398 aaPredicted RBP5.97□□□□□ -1.45
VPS39-202ENST00000348544 CRIP3Q6Q6R5 217 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 C1QL2Q7Z5L3 287 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 ZNF429Q86V71 674 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.97□□□□□ -1.45
VPS39-202ENST00000348544 SGPP2Q8IWX5 399 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 ZNF664Q8N3J9 261 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 OR14K1Q8NGZ2 314 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 OR14C36Q8NHC7 312 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 REEP6Q96HR9 211 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 CCDC3Q9BQI4 270 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 RRAGCQ9HB90 399 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 LIPGQ9Y5X9 500 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 ATG2BQ96BY7 2078 aa5.97□□□□□ -1.45
VPS39-202ENST00000348544 A0A0J9YY10 115 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 DHRS7CA6NNS2 312 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 H0YIG0 161 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 CLDN4O14493 209 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 MT-ATP6P00846 226 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 IFNA21P01568 189 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 PGA4P0DJD7 388 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 PGA5P0DJD9 388 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 GZMBP10144 247 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 ZNF17P17021 662 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 HOXA6P31267 233 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 APLNRP35414 380 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 FOXO1Q12778 655 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 GPM6BQ13491 265 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 ICAM4Q14773 271 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 DEGS2Q6QHC5 323 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 LYZL2Q7Z4W2 148 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 DPPA2Q7Z7J5 298 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 SULF2Q8IWU5 870 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 OR52M1Q8NGK5 317 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 OR13D1Q8NGV5 346 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 SLAMF6Q96DU3 332 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 SNX22Q96L94 193 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 ATG101Q9BSB4 218 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 ZNF2Q9BSG1 426 aaPredicted RBP5.96□□□□□ -1.45
VPS39-202ENST00000348544 SMDT1Q9H4I9 107 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 ZNF319Q9P2F9 582 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 TCFL5Q9UL49 500 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 KCNIP3Q9Y2W7 256 aa5.96□□□□□ -1.45
VPS39-202ENST00000348544 IGKV1-9A0A0C4DH69 117 aa5.96□□□□□ -1.46
VPS39-202ENST00000348544 ZNF205O95201 554 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms