RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 APOC3P02656 99 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 HLA-GP17693 338 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 MPLP40238 635 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 ALDH3B1P43353 468 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 RAB35Q15286 201 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 SLC9A3R2Q15599 337 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 FAM74A1Q5RGS3 127 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 JMJD6Q6NYC1 403 aaPredicted RBP16.89■□□□□ 0.29
COL9A3-201ENST00000343916 ARRDC1Q8N5I2 433 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 NAXEQ8NCW5 288 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 CSNK2A3Q8NEV1 391 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 SEMA6DQ8NFY4 1073 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 REEP6Q96HR9 211 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 ADGRG7Q96K78 797 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 VRK1Q99986 396 aaPredicted RBP16.89■□□□□ 0.29
COL9A3-201ENST00000343916 LDAHQ9H6V9 325 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 SPRY1O43609 319 aaPredicted RBP16.89■□□□□ 0.29
COL9A3-201ENST00000343916 LCATP04180 440 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 MTCP1P56278 107 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 CEACAM16Q2WEN9 425 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 TMEM128Q5BJH2 165 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 HSD17B13Q7Z5P4 300 aaPredicted RBP16.89■□□□□ 0.29
COL9A3-201ENST00000343916 OR13G1Q8NGZ3 307 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 ST8SIA2Q92186 375 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 MRPS24Q96EL2 167 aaKnown RBP16.89■□□□□ 0.29
COL9A3-201ENST00000343916 ZNF701Q9NV72 531 aaPredicted RBP16.89■□□□□ 0.29
COL9A3-201ENST00000343916 ZNF581Q9P0T4 197 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 GHRLQ9UBU3 117 aa16.89■□□□□ 0.29
COL9A3-201ENST00000343916 FAM230AA0A1W2PPH8 454 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 DNPH1O43598 174 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 APOC1P02654 83 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 JMJD7P0C870 316 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 TMEM225BP0DP42 221 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 SERPINF1P36955 418 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 DLSTP36957 453 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 OR3A2P47893 321 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 FAM189A2Q15884 450 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 NKAPLQ5M9Q1 402 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 H3F3CQ6NXT2 135 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 SLC16A14Q7RTX9 510 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 OR1F12Q8NHA8 337 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 OR2V1Q8NHB1 315 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 THOC3Q96J01 351 aaKnown RBP16.88■□□□□ 0.29
COL9A3-201ENST00000343916 ZNF75AQ96N20 296 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 HDHD3Q9BSH5 251 aaPredicted RBP16.88■□□□□ 0.29
COL9A3-201ENST00000343916 EHFQ9NZC4 300 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 DBX1A6NMT0 343 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 LUMP51884 338 aaPredicted RBP16.88■□□□□ 0.29
COL9A3-201ENST00000343916 AADACL3Q5VUY0 350 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 DRAM2Q6UX65 266 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 Q6ZSR3 168 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 KCNRGQ8N5I3 272 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 FOXB1Q99853 325 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 MBD2Q9UBB5 411 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 MCTS1Q9ULC4 181 aaKnown RBP16.88■□□□□ 0.29
COL9A3-201ENST00000343916 ARID1AO14497 2285 aa16.88■□□□□ 0.29
COL9A3-201ENST00000343916 FREM1Q5H8C1 2179 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 IGKV1-27A0A075B6S5 117 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 IGKV1D-8A0A087WSZ0 117 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 A0A0D9SG52 128 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 SERPINA7P05543 415 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 SLC25A4P12235 298 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 HTR5AP47898 357 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 PSG4Q00888 419 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 ACTBL2Q562R1 376 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 FOXJ2Q9P0K8 574 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 LRFN1Q9P244 771 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 LNP1A1A4G5 178 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 MPTX1A8MV57 137 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 C9orf172C9J069 976 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 ADAP1O75689 374 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 CST2P09228 141 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 CPT2P23786 658 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 ARHGDIBP52566 201 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 CLEC18BQ6UXF7 455 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 FAM219AQ8IW50 185 aa16.87■□□□□ 0.29
COL9A3-201ENST00000343916 RTBDNQ9BSG5 229 aaPredicted RBP16.87■□□□□ 0.29
COL9A3-201ENST00000343916 KANTRA0A1W2PQU2 76 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 GLRA1P23415 457 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 TAS2R31P59538 309 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 SUPT4H1P63272 117 aaKnown RBP16.86■□□□□ 0.29
COL9A3-201ENST00000343916 SRYQ05066 204 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 FOXO1Q12778 655 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 ABLIM2Q6H8Q1 611 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 CPT1CQ8TCG5 803 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 TM2D1Q9BX74 207 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 HES7Q9BYE0 225 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 PLEKHJ1Q9NW61 149 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 GLS2Q9UI32 602 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 A0A1W2PNU3 283 aaPredicted RBP16.86■□□□□ 0.29
COL9A3-201ENST00000343916 CBX5P45973 191 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 SCRN3Q0VDG4 424 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 ZNF345Q14585 488 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 DBX2Q6ZNG2 339 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 PXT1Q8NFP0 134 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 THAP6Q8TBB0 222 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 TAAR9Q96RI9 348 aa16.86■□□□□ 0.29
COL9A3-201ENST00000343916 ZNF471Q9BX82 626 aaPredicted RBP16.86■□□□□ 0.29
COL9A3-201ENST00000343916 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.86■□□□□ 0.294e-7■■□□□ 13.3
COL9A3-201ENST00000343916 ZNHIT1O43257 154 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms