RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 C12orf4Q9NQ89 552 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 DLL3Q9NYJ7 618 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 ZNF629Q9UEG4 869 aaPredicted RBP8.91□□□□□ -0.98
USP54-201ENST00000339859 PPIAL4AQ9Y536 164 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 HELZP42694 1942 aaKnown RBP8.91□□□□□ -0.98
USP54-201ENST00000339859 F5H0A9 414 aaPredicted RBP8.91□□□□□ -0.98
USP54-201ENST00000339859 SLC17A2O00624 439 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 FABP5Q01469 135 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 TSC22D1Q15714 1073 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 TIMM23BQ5SRD1 257 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 HEXA-AS1Q9H8Q6 139 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 PLPP2O43688 288 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 CELA3AP09093 270 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 COX5BP10606 129 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 KIR2DS2P43631 304 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 ATP5J2P56134 94 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 CCBE1Q6UXH8 406 aaPredicted RBP8.91□□□□□ -0.98
USP54-201ENST00000339859 SHISA5Q8N114 240 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 LGI3Q8N145 548 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 RBMXL3Q8N7X1 1067 aaKnown RBP8.91□□□□□ -0.98
USP54-201ENST00000339859 ZFP62Q8NB50 900 aaPredicted RBP8.91□□□□□ -0.98
USP54-201ENST00000339859 OR5A2Q8NGI9 324 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 GRPEL2Q8TAA5 225 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 GPX7Q96SL4 187 aaPredicted RBP8.91□□□□□ -0.98
USP54-201ENST00000339859 CHST6Q9GZX3 395 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 METTL17Q9H7H0 456 aaPredicted RBP8.91□□□□□ -0.98
USP54-201ENST00000339859 DLL4Q9NR61 685 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 ZNF224Q9NZL3 707 aa8.91□□□□□ -0.98
USP54-201ENST00000339859 A0A0G2JMM0 328 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 A0A0G2JMP0 313 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 A0A1W2PPB8 328 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 A0A1W2PRS3 328 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 KIR3DP1A8MWS1 328 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 B9A039 149 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 ANGPTL7O43827 346 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 IFNA10P01566 189 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 PSG4Q00888 419 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 VMA21Q3ZAQ7 101 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 OR4M2Q8NGB6 313 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 LINC01560Q8TB33 94 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 ZMAT3Q9HA38 289 aaKnown RBP8.9□□□□□ -0.98
USP54-201ENST00000339859 LAMP3Q9UQV4 416 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 SCN3AQ9NY46 2000 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 NCBP2LA6PVI3 153 aaKnown RBP8.9□□□□□ -0.98
USP54-201ENST00000339859 M0QYG6 137 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 BRS3P32247 399 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 SUCLG1P53597 346 aaKnown RBP8.9□□□□□ -0.98
USP54-201ENST00000339859 OR8H3Q8N146 312 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 ZNF2Q9BSG1 426 aaPredicted RBP8.9□□□□□ -0.98
USP54-201ENST00000339859 AICDAQ9GZX7 198 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 HOXB5P09067 269 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 EPHA2P29317 976 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 MVDP53602 400 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 SULT4A1Q9BR01 284 aa8.9□□□□□ -0.98
USP54-201ENST00000339859 MRM2Q9UI43 246 aaKnown RBP8.9□□□□□ -0.98
USP54-201ENST00000339859 J3QT63 122 aa8.9□□□□□ -0.99
USP54-201ENST00000339859 ZBTB25P24278 435 aa8.9□□□□□ -0.99
USP54-201ENST00000339859 FOXO1Q12778 655 aa8.9□□□□□ -0.99
USP54-201ENST00000339859 HLXQ14774 488 aaPredicted RBP8.9□□□□□ -0.99
USP54-201ENST00000339859 PHLDA2Q53GA4 152 aa8.9□□□□□ -0.99
USP54-201ENST00000339859 SLC25A53Q5H9E4 307 aa8.9□□□□□ -0.99
USP54-201ENST00000339859 OR2J1Q9GZK6 312 aa8.9□□□□□ -0.99
USP54-201ENST00000339859 MS4A18H0YCH9 400 aa8.9□□□□□ -0.99
USP54-201ENST00000339859 HAND1O96004 215 aa8.9□□□□□ -0.99
USP54-201ENST00000339859 ADH4P08319 380 aa8.9□□□□□ -0.99
USP54-201ENST00000339859 AKR1C1Q04828 323 aa8.9□□□□□ -0.99
USP54-201ENST00000339859 SSBP1Q04837 148 aaKnown RBP8.9□□□□□ -0.99
USP54-201ENST00000339859 GGTLC2Q14390 218 aa8.9□□□□□ -0.99
USP54-201ENST00000339859 MS4A18Q3C1V0 323 aa8.9□□□□□ -0.99
USP54-201ENST00000339859 SKA3Q8IX90 412 aa8.9□□□□□ -0.99
USP54-201ENST00000339859 ST6GALNAC3Q8NDV1 305 aa8.9□□□□□ -0.99
USP54-201ENST00000339859 TSNAXQ99598 290 aaKnown RBP8.9□□□□□ -0.99
USP54-201ENST00000339859 SLC25A21Q9BQT8 299 aaPredicted RBP8.9□□□□□ -0.99
USP54-201ENST00000339859 FBXO7Q9Y3I1 522 aa8.9□□□□□ -0.99
USP54-201ENST00000339859 DOCK4Q8N1I0 1966 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 HMX3A6NHT5 357 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 DHODHQ02127 395 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 AADACL4Q5VUY2 407 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 SLC7A6Q92536 515 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 CMTM3Q96MX0 182 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 KCNK17Q96T54 332 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 CTDSP2O14595 271 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 COX7A1P24310 79 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 RPS19P39019 145 aaKnown RBP8.89□□□□□ -0.99
USP54-201ENST00000339859 CLN8Q9UBY8 286 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 TMEM229AB2RXF0 380 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 GPX5O75715 221 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 ACSM4P0C7M7 580 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 APOBEC3AP31941 199 aaPredicted RBP8.89□□□□□ -0.99
USP54-201ENST00000339859 DVL3Q92997 716 aaPredicted RBP8.89□□□□□ -0.99
USP54-201ENST00000339859 A3GALT2U3KPV4 340 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 MYO10Q9HD67 2058 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 CLDN1O95832 211 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 SLC25A30Q5SVS4 291 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 TREM2Q9NZC2 230 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 KCNE5Q9UJ90 142 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 ZFC3H1O60293 1989 aaKnown RBP8.89□□□□□ -0.99
USP54-201ENST00000339859 CROCCQ5TZA2 2017 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 ZIC3O60481 467 aa8.89□□□□□ -0.99
USP54-201ENST00000339859 CALCRP30988 508 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms