RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TAAR3PQ9P1P4 343 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 U3KQ87 197 aa11.32□□□□□ -0.6
SDC3-201ENST00000336798 AVPR2P30518 371 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 LYZP61626 148 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 CDC20Q12834 499 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 KMT5CQ86Y97 462 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 UBALD2Q8IYN6 164 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 WDR89Q96FK6 387 aaPredicted RBP11.31□□□□□ -0.6
SDC3-201ENST00000336798 RSRP1Q9BUV0 290 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 PPIL1Q9Y3C6 166 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 GABRG2P18507 467 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 ORM2P19652 201 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 FAM26EQ8N5C1 309 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 APOBEC3DQ96AK3 386 aaPredicted RBP11.31□□□□□ -0.6
SDC3-201ENST00000336798 LPAR2Q9HBW0 351 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 ACSM4P0C7M7 580 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 ABCD3P28288 659 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 BTG1P62324 171 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 TPBGQ13641 420 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 SLC16A12Q6ZSM3 486 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 SLC36A1Q7Z2H8 476 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 OR2G2Q8NGZ5 317 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 ZNF385DQ9H6B1 395 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 TRAPPC1Q9Y5R8 145 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 WNT1P04628 370 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 RAB5AP20339 215 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 CD40P25942 277 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 CD300CQ08708 224 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 FNDC7Q5VTL7 733 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 ZNF774Q6NX45 483 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 SFTPA2Q8IWL1 248 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 SFTPA1Q8IWL2 248 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 OR4F17Q8NGA8 305 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 ELOVL1Q9BW60 279 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 NEURL1O76050 574 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 CYC1P08574 325 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 SLC37A1P57057 533 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 WFDC3Q8IUB2 231 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 ZNF683Q8IZ20 524 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 NOL4LQ96MY1 436 aaPredicted RBP11.31□□□□□ -0.6
SDC3-201ENST00000336798 PLA2G2FQ9BZM2 168 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 MIOXQ9UGB7 285 aa11.31□□□□□ -0.6
SDC3-201ENST00000336798 TRAV34A0A0B4J273 112 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 ADAM20O43506 726 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 TNFAIP6P98066 277 aaPredicted RBP11.3□□□□□ -0.6
SDC3-201ENST00000336798 ZBTB37Q5TC79 503 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 OR4A4PQ8NGN8 299 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 CNRIP1Q96F85 164 aaPredicted RBP11.3□□□□□ -0.6
SDC3-201ENST00000336798 K7EQS6 105 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 CD200P41217 278 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 NHLH1Q02575 133 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 NHLH2Q02577 135 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 MYPOPQ86VE0 399 aaPredicted RBP11.3□□□□□ -0.6
SDC3-201ENST00000336798 SPEM1Q8N4L4 309 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 FAAP24Q9BTP7 215 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 VAMP8Q9BV40 100 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 IL17BQ9UHF5 180 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 ERRFI1Q9UJM3 462 aaPredicted RBP11.3□□□□□ -0.6
SDC3-201ENST00000336798 POMT2Q9UKY4 750 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 RER1O15258 196 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 TMEM97Q5BJF2 176 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 CCDC190Q86UF4 302 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 ZNF383Q8NA42 475 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 OR1B1Q8NGR6 318 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 LRRC29Q8WV35 223 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 PDFQ9HBH1 243 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 COA4Q9NYJ1 87 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 PTBP1P26599 531 aaKnown RBP eCLIP11.3□□□□□ -0.6
SDC3-201ENST00000336798 SPINK14Q6IE38 97 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 TUSC5Q8IXB3 177 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 PCOLCE2Q9UKZ9 415 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 MASP2O00187 686 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 MT-CO3P00414 261 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 RPLP1P05386 114 aaKnown RBP11.3□□□□□ -0.6
SDC3-201ENST00000336798 CSF2RBP32927 897 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 MPLP40238 635 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 LPAR6P43657 344 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 TTC9Q92623 222 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 HDGFL3Q9Y3E1 203 aa11.3□□□□□ -0.6
SDC3-201ENST00000336798 CDK2AP1O14519 115 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 ETFDHQ16134 617 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 DHRS11Q6UWP2 260 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 MRGPRDQ8TDS7 321 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 MZB1Q8WU39 189 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 ZNF207O43670 478 aaKnown RBP11.29□□□□□ -0.6
SDC3-201ENST00000336798 FBP1P09467 338 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 OR5AL1P0C617 328 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 TNXAQ16473 311 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 ANKRD33Q7Z3H0 272 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 SMIM12Q96EX1 92 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 RPP25Q9BUL9 199 aaKnown RBP11.29□□□□□ -0.6
SDC3-201ENST00000336798 OR2D2Q9H210 308 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 SLC26A1Q9H2B4 701 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 PLEKHA2Q9HB19 425 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 METTL12A8MUP2 240 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 HSBP1O75506 76 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 NPY1RP25929 384 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 FGF8P55075 233 aaPredicted RBP11.29□□□□□ -0.6
SDC3-201ENST00000336798 FZD5Q13467 585 aa11.29□□□□□ -0.6
SDC3-201ENST00000336798 AQP6Q13520 282 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms