RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 TMEM210A6NLX4 147 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 CDC14BO60729 498 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 CHRM2P08172 466 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 IL7P13232 177 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 CDK2P24941 298 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 TAS2R20P59543 309 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 RPS27AP62979 156 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 BSPH1Q075Z2 132 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 MSMPQ1L6U9 139 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 TMEM69Q5SWH9 247 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 NCMAPQ5T1S8 102 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 HACD4Q5VWC8 232 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 C1QL2Q7Z5L3 287 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 ZNF573Q86YE8 665 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 Q8N402 240 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 FAM89BQ8N5H3 189 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 BHLHE23Q8NDY6 225 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 TMEM104Q8NE00 496 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 PRR7Q8TB68 274 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 SMIM4Q8WVI0 70 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 RTL8AQ9BWD3 113 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 LPAR5Q9H1C0 372 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 KCNK15Q9H427 330 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 ESRP2Q9H6T0 727 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 RHOFQ9HBH0 211 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 DIABLOQ9NR28 239 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 PCDHB16Q9NRJ7 776 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 HIVEP3Q5T1R4 2406 aa12.74□□□□□ -0.37
CCDC88C-202ENST00000334448 SMG1Q96Q15 3661 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 PRR14LQ5THK1 2151 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 MYO7BQ6PIF6 2116 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 RAB27BO00194 218 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 AKR7A2O43488 359 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 CLDN14O95500 239 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 PTBP3O95758 552 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 ACAA1P09110 424 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 CSF3P09919 207 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 CA6P23280 308 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 KLF3P57682 345 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 IGFBP7Q16270 282 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 BAK1Q16611 211 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 ALKBH6Q3KRA9 238 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 PYDC2Q56P42 97 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 NHLRC3Q5JS37 347 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 ELP2Q6IA86 826 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 CALHM1Q8IU99 346 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 LYSMD2Q8IV50 215 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 ZNF843Q8N446 348 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 OR5D18Q8NGL1 313 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 SETD6Q8TBK2 473 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 TRIM63Q969Q1 353 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 FAM46BQ96A09 425 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 RFT1Q96AA3 541 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 ADAT1Q9BUB4 502 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 TMEM59Q9BXS4 323 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 METTL9Q9H1A3 318 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 OR51I2Q9H344 312 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 TMEM100Q9NV29 134 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 ESPL1Q14674 2120 aa12.73□□□□□ -0.37
CCDC88C-202ENST00000334448 IGKV1-12A0A0C4DH73 117 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 LRP5LA4QPB2 252 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 FOXI3A8MTJ6 420 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 ZNF732B4DXR9 585 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 GABARAPH6UMI1 98 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 J3QT63 122 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 ABCD4O14678 606 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 MLNRO43193 412 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 TIMM8AO60220 97 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 KDM4BO94953 1096 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 IGKV1D-12P01611 117 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 TMEM225BP0DP42 221 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 GPM6AP51674 278 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 IL24Q13007 206 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 BEX5Q5H9J7 111 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 DMRTC1Q5HYR2 192 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 STEAP3Q658P3 488 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 OR10K2Q6IF99 312 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 ZNF611Q8N823 705 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 OR13G1Q8NGZ3 307 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 MRPL24Q96A35 216 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 RNF170Q96K19 258 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 Q96M66 194 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 S100A13Q99584 98 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 URM1Q9BTM9 101 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 TLNRD1Q9H1K6 362 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 NPDC1Q9NQX5 325 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 CA10Q9NS85 328 aa12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 RBMX2Q9Y388 322 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-202ENST00000334448 PRSS44E7EML9 344 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 SULT1C2O00338 296 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 C1QL1O75973 258 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 MPIG6BO95866 241 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 MELTFP08582 738 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 MGMTP16455 207 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 CPT2P23786 658 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 GRNP28799 593 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 FABP6P51161 128 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 MZT1Q08AG7 82 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms